BAC Information

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BAC

Clone NameMSMg01-373L02
Chromosome4 (Build37)
Map Location 5,695,799 - 5,696,344
singlet/doubletsinglet
Overlap gene1700012H17Rik
Upstream geneImpad1, LOC100039338
Downstream geneLOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, Tox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373L02.T7 (MSMg01no373_l02.b1)MSMg01-373L02.TJ (MSMg01no373_l02.g1)
ACCAG479663AG479664
length714730
length of high quality
(start - end)
557 (11 - 567)---
definitionCHROMAT_FILE: MSMg01no373_l02.b1 PHD_FILE: MSMg01no373_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:42 2005CHROMAT_FILE: MSMg01no373_l02.g1 PHD_FILE: MSMg01no373_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTTCAGAGGATCCGCGGAATTCTTGACATCTCCATGCTCATATTAACA
ACTCATACTAACTCAGGACTCCATCGCACACCCCTTTTCCCCTGAAGTAC
AGCACAAAGGTACGGACACGCTTCTACAAGGAGCATCAGTGCAGACATGA
GCATGGAACATGGAAGACGTTTCTTACCACTAATCCAATACCTGCCAGAC
CATGAACTGATCTCTTCTTTCCTAGCAAATAGATGAGCAGGTTCCTGATG
GAAGAATGCTTGAAATCTGAGTGCCCTGGAATTCAGCTGGTTCCTCGTGG
GGGTCAGGATGTCTGGAAACTAGAGCTTTTCTGTCTGTCTATCTCTCCTT
TCCTCTCCACCTACCCCCACCCCGTCTCTCTCAGGAAAAACAGGTTTTCT
ACAGGAGCTACTGCAATGAGGCAAAAGGGAATTCAGAACAGAACTGGATT
CCATTCCAAATAAGTCATGGTTCAGGAGGGAAGACTGACAGCAAGGGAGC
ATAGCTGGGGCCAGTGAGTCAATGTTACTGAGCGGAAATGTCTGGTATCT
GGGGACTCTGGCTCGATGGACCTTCTACAGCTTTTATTGAAAGCAGGCCC
CAGGGGGTAAGAAGAAAAACCAAATTTGATAATGTTCATATACAGTGGGC
TATTTCTCCAAACTGATGTACCAAAGATTTTTGCTACACAGGGTGAACCT
TGATTAAAACATGG
CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTCCACATGTNNTAG
GNTGNNACACCNTTATTNNAGNNATATTGTTTTCCCCCGGGNNNNNNNNN
GCGGGGNGNNGGGGGNTTTTTCGNNNNAAAACTCCCNNTACGTTTTTTTT
TTTTTTTTTTTTCCCCCCCCCCCCGCACGCCCTTTCGNNCCGTTTTGTTA
AAAAAAAACCNNNNNTTGATTGAAGGGCCACTTTTCTGAAANNNNTTGNT
GAAANNAAGTAGAAAAAAATTGGTCCACCACCCTCCTCATGTCCCCATCT
CAAAAGAGGACACTGNANTAAATATTATATCAGCCTAGACCTCCCTACCT
GNNAGTGCACCGAAACTTTAAATTATCCTTTTGATGCCCCCCCCGGGNAA
AGGTTTTTTGGGTCCCCCCTCCTTCTTTTTTTGCCCAAAGGCCCCCACCC
CCAAATGTTTTACCCTTTTTGGGGGGCCAATTTTATCCCCCCCAAGGGCC
CTTTTTTCTTTTTCCCCCCCCTTTTTTTTTTTTTCTCTCCCCACTCTCCT
CTTTTTTTTTTTTTTTTTTTAAGCCCCTTTTTCTCCGCCTTTTTTTCCCC
CCTTCCCCCCCCCAATTTCTTTTTTCTCGGGGGGTTTTTTTTTTTCTTCT
TTTAACCCCCCCCCCCTTTTTTTTTTTTTTTTTGTAAAACTTTTCTCCCC
CCCCCCTGGGAAAAATCCTTAATTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_l02.b1 MSMg01no373_l02.b1 CHROMAT_FILE:
MSMg01no373_l02.b1 PHD_FILE: MSMg01no373_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:42 2005
         (557 letters)



>mm_chr4_5695592_5696548
          Length = 957

 Score = 1009 bits (522), Expect = 0.0
 Identities = 540/546 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   ggaattcttgacatctccatgctcatattaacaactcatactaactcaggactccatcgc 67
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 753 ggaattcttgacatcgccatgctcatattaacaactcatacttactcaggactccatcgc 694

                                                                       
Query: 68  acaccccttttcccctgaagtacagcacaaaggtacggacacgcttctacaaggagcatc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 acaccccttttcccctgaagtacagcacaaaggtacggacacgcttctacaaggagcatc 634

                                                                       
Query: 128 agtgcagacatgagcatggaacatggaagacgtttcttaccactaatccaatacctgcca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 agtgcagacatgagcatggaacatggaagacgtttcttaccactaatccaatacctgcca 574

                                                                       
Query: 188 gaccatgaactgatctcttctttcctagcaaatagatgagcaggttcctgatggaagaat 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaccatgaactgatctcttctttcctagcaaatagatgagcaggttcctgatggaagaat 514

                                                                       
Query: 248 gcttgaaatctgagtgccctggaattcagctggttcctcgtgggggtcaggatgtctgga 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gcttgaaatctgagtgccctggaattcagctggttcctcgtgggggtcaggatgtctgga 454

                                                                       
Query: 308 aactagagcttttctgtctgtctatctctcctttcctctccacctacccccaccccgtct 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 453 aactagagcttttctgtctgtctatctctcctttcctctccacctacccccaccctgtct 394

                                                                       
Query: 368 ctctcaggaaaaacaggttttctacaggagctactgcaatgaggcaaaagggaattcaga 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctctcaggaaaaacaggttttctacaggagctactgcaatgaggcaaaagggaattcaga 334

                                                                       
Query: 428 acagaactggattccattccaaataagtcatggttcaggagggaagactgacagcaaggg 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 acagaactggattccattccaaataagtcatggttcaggagggaagactgacagcaaggg 274

                                                                       
Query: 488 agcatagctggggccagtgagtcaatgttactgagcggaaatgtctggtatctggggact 547
           ||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||
Sbjct: 273 agcatagctggggccagtgagtcaatgttactgagtggaaatatctggtatccggggact 214

                 
Query: 548 ctggct 553
           ||||||
Sbjct: 213 ctggct 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)