BAC Information

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BAC

Clone NameMSMg01-373M23
Chromosome4 (Build37)
Map Location 126,191,839 - 126,192,379
singlet/doubletsinglet
Overlap geneEif2c4
Upstream geneGrik3, Csf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351
Downstream geneClspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373M23.T7 (MSMg01no373_m23.b1)MSMg01-373M23.TJ (MSMg01no373_m23.g1)
ACCAG479752AG479753
length662726
length of high quality
(start - end)		174 (41 - 214)540 (57 - 596)
definitionCHROMAT_FILE: MSMg01no373_m23.b1 PHD_FILE: MSMg01no373_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:51 2005CHROMAT_FILE: MSMg01no373_m23.g1 PHD_FILE: MSMg01no373_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAGTCACGAGGATCCGCGGAATTCCTGATAATGTACCATTTGGTGAAGA
CAGTTTCTTTCCAGAGGTCGGGGGTCAGGTAGCTCTAAGTCTTGGAGATG
GCATCAAAGGTGGCCTTAGCAAAGTTGCCCAGAGTGGCAGTGCAGCCTCT
GGCTGAAGTGTAACAGTCATCTATACCGGCCATCATCAGGAGCTTCTTGG
GCACAGGAGCAGAGACAATTCCAGTGCCTCTGGGGGCAGGGATGAAACGC
ACCAAGCCAGAAGCCCCCAGGGGGCCGGGCCCCCTTTGGTGGGGAAAAAA
GGGGGGGGGTTTTGGCCCCAACTTTTTTTTTTCCCCCCCAAAAAACCCCC
CCCCCCTCCCCCGGGGGGGGAGAAAAAAGAAANAAGAAANNNTTCTCTNT
TTTGGTCTTTNNTTAAAAAANAAANNNNAAGANNNNNNNNNNNNTTCGCT
GTCGTCNNNNNNNNNNTTTCCNNNNCNNNNNNNNNNTGNTGTTTGGGGGG
GGGGGGGGGGGGGGGGGGGGCGCCCCCCCCCCCCCCTTATTTTTTTTTAT
TAAACAATAACATCCCCCCGCGGGCGGGGGGTGTTCCTTTCTTCACCCAC
CCAAAAAATAATAATGTTCTTTTTTTTCCTTTTTTCCCGCGGGCCCTGCC
GCTACCCTCCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTGAATAACCCAACTCATGTAAGATTGATATGTATTTAAACACT
GTTTATTTAGGAGAGCCAAAAGCCAATCTTTCATGTCAGACAAAAGGTTA
GTGATCCCGAGGACAGGAATGCATCTGCCACATGCAGTAAGTGCACGGGC
ACTTCCATACTCACTTCTCTCAGGCACAGAACTCGATGCACCACACGTTG
TGTGATTAGAAAAGCAAGATTGAGTAAGAAGGAAAGAACACACTGCTAGA
GACAGGCTCTAATAGCTGAGAGCAACATGGAGCTATAAAGGAAGGGAGGA
CAACTACACAAATATTCAAAGCAGTATCTGTCTTCCAATGAAGGCCTGTA
TGATGGCTAGACCCTAGTAGAGTCATCCTGTACTGAAAATTACAACAGTA
TAGTAATTGATTACAAGTATTGTATTCCTTTTTAAAAGTCTTAGTTGTGT
TTGTATGTACATGTACGTAGCATATGTGTGCATGCGTGTGTGTGCATATG
GAGGCCAGGGGTCAACATTGCAGCCTCCTCATCACTTTGCTTTTTTGGAC
AGAGTCTCTCCTGCACCTAAAGAGCACTCAGTCAGTGACTATGCTGTGTG
ATGAACAAGCTCAGGGATCCTCCCACTTTTTGCCCCGTTCAAGCTAAGAT
GGTCCCCACCCAGGCCAAGGGTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_m23.g1 MSMg01no373_m23.g1 CHROMAT_FILE:
MSMg01no373_m23.g1 PHD_FILE: MSMg01no373_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:51 2005
         (540 letters)



>mm_chr4_126191639_126192579
          Length = 941

 Score =  953 bits (493), Expect = 0.0
 Identities = 529/541 (97%), Gaps = 2/541 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaataacccaactcatgtaagattgatatgtatttaaacactgtttatttaggagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaataacccaactcatgtaagattgatatgtatttaaacactgtttatttaggagagc 260

                                                                       
Query: 61  caaaagccaatctttcatgtcagacaaaaggttagtgatcccgaggacaggaatgcatct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 caaaagccaatctttcatgtcagacaaaaggttagtgatcccgaggacaggaatgcattt 320

                                                                       
Query: 121 gccacatgcagtaagtgcacgggcacttccatactcact-tctctcaggcacagaactcg 179
           ||||| ||||||||||||| |||||||||||| |||||| || |||||||||||||||||
Sbjct: 321 gccacgtgcagtaagtgcatgggcacttccatgctcactctcactcaggcacagaactcg 380

                                                                       
Query: 180 atgcaccacacgttgtgtgattagaaaagcaagattgagtaagaaggaaagaacacactg 239
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 atgcaccacacattgtgtgattagaaaagcaagattgagtaagagggaaagaacacactg 440

                                                                       
Query: 240 ctagagacaggctctaatagctgagagcaacatggagctataaaggaagggaggacaact 299
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagagacaggcactaatagctgagagcaacatggagctataaaggaagggaggacaact 500

                                                                       
Query: 300 acacaaatattcaaagcagtatctgtcttccaatgaaggcctgtatgatggctagaccct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacaaatattcaaagcagtatctgtcttccaatgaaggcctgtatgatggctagaccct 560

                                                                       
Query: 360 agtagagtcatcctgtactgaaaattacaacagtatagtaattgattacaagtattgtat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtagagtcatcctgtactgaaaattacaacagtatagtaattgattacaagtattgtat 620

                                                                       
Query: 420 tcctttttaaaagtcttagttgtgtttgtatgtacatgtacgtagcatatgtgtgcatgc 479
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 tcctttttaaaagtcttagttgtgtttgtatgtacatgtatgtagcatatgtgtgcatgc 680

                                                                       
Query: 480 gtgtgtgtgcatatggaggccaggggtcaacattgcagcctcctca-tcactttgctttt 538
           |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 gtgtgtgtgcatctggaggccaggggtcaacattgcagcctcctcaatcactttgctttt 740

            
Query: 539 t 539
           |
Sbjct: 741 t 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space:   493430
Effective search space used:   493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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