Query= MSMg01no373_n08.b1 MSMg01no373_n08.b1 CHROMAT_FILE:
MSMg01no373_n08.b1 PHD_FILE: MSMg01no373_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:52 2005
(479 letters)
>mm_chr4_87336359_87337237
Length = 879
Score = 841 bits (435), Expect = 0.0
Identities = 462/471 (98%), Gaps = 1/471 (0%)
Strand = Plus / Plus
Query: 8 attctttttctctatcccccacctcttcataggagtgctggaattataggcacacactac 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 attctttttctctatcccccacctcttcataggagtgctggaattataggcacacactac 268
Query: 68 catggggttctggggatctggactagagtcatcaggcttgtgcagcaagtacttttacat 127
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 269 catgggattctggggatctggactagagtcgtcaggcttgtgcagcaagtacttttacat 328
Query: 128 atctctagcctctaacttaattttttaataagaaaaatagaaaaaaattaatttatcaca 187
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 329 atctctagcctctaacttaattttttaataagaaaaatagaaaaaa-ttaatttatcaca 387
Query: 188 ctgtgattacatatcagattctagtaatataattttgaggctgttacaggctatcaaagc 247
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctgtgattacatatcagatcctagtaatataattttgaggctgttacaggctatcaaagc 447
Query: 248 agagatgtctaatcaaaatctgagaaaataagtctactgctcaaagatggattcattcat 307
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 448 agagatgtctaatcaaaatctgagaaaataagtctacagctcaaagatggattcattcat 507
Query: 308 tcagcaaatattaactcaagaacttctgcacctgacgctgtgtcagagatggatccatgc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tcagcaaatattaactcaagaacttctgcacctgacgctgtgtcagagatggatccatgc 567
Query: 368 atgacaccaccaactatttactgagctcctacagggtgaaatgtgtatatgtgagtattt 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atgacaccaccaactatttactgagctcctacagggtgaaatgtgtatatgtgagtattt 627
Query: 428 gtgcctgtgtgcatgtgcgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtg 478
||||||||||||||||| ||||||||||| |||||||||||| || |||||
Sbjct: 628 gtgcctgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagtgtg 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_n08.g1 MSMg01no373_n08.g1 CHROMAT_FILE:
MSMg01no373_n08.g1 PHD_FILE: MSMg01no373_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:52 2005
(543 letters)
>mm_chr4_87488991_87489930
Length = 940
Score = 988 bits (511), Expect = 0.0
Identities = 534/543 (98%), Gaps = 3/543 (0%)
Strand = Plus / Minus
Query: 1 ctgttctacagaaagattttattaataaataatttaagttcccctgtagaggtccccctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ctgttctacagaaagattttattaataaataatttaagttcccctgtagaggtccccctc 718
Query: 61 cacctcctgatgtttattggtttttacgatgtaacatgagaagtataactgatagtttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 cacctcctgatgtttattggtttttacgatgtaacatgagaagtataactgatagtttaa 658
Query: 121 gaacttatatctttaaaatatgtacaatactccatatagatctaaagtttagtaccagtg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 657 gaacttatatctttaaaatatgtacaatactccatatagatctaatgtttactaccagtg 598
Query: 181 cttgggtgttctgcaatattgttagtgagctgattacaaattgccagcattctcagtgag 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 597 cttgggtgttctgcaatattgttagtgagctgattgcaaattgccagcattctcagtgag 538
Query: 241 tcaccaaatctattaaaaaaatcttaaggatattagatttgaaaatgttcttccttaatt 300
|||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 537 tcaccaaaccaattaaaaaaatcttaagggtattagatttgaaaatgttcttccttaatt 478
Query: 301 tagtttgtccattatatgttattttaattattcatagtattgcttaacatgccaggaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tagtttgtccattatatgttattttaattattcatagtattgcttaacatgccaggaaat 418
Query: 361 gtcctgtaatagaatttattaaataacaaagtttcagtaatatgaattctatatttagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtcctgtaatagaatttattaaataacaaagtttcagtaatatgaattctatatttagta 358
Query: 421 gcatgttttaaagtctcagattaaaatgctttgtcaagagttatttagctagtttgaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gcatgttttaaagtctcagattaaaatgctttgtcaagagttatttagctagtttgaagt 298
Query: 481 aaaaaaaaaaaaacaggtctttgcttggtagatttatccattttgtaattttgaaaccaa 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ---aaaaaaaaaacaggtctttgcttggtagatttatccattttgtaattttgaaaccaa 241
Query: 541 gtg 543
|||
Sbjct: 240 gtg 238
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 940
Length adjustment: 10
Effective length of query: 533
Effective length of database: 930
Effective search space: 495690
Effective search space used: 495690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
