Query= MSMg01no374_c19.b1 MSMg01no374_c19.b1 CHROMAT_FILE:
MSMg01no374_c19.b1 PHD_FILE: MSMg01no374_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:19 2005
(490 letters)
>mm_chr4_4592605_4593494
Length = 890
Score = 797 bits (412), Expect = 0.0
Identities = 486/556 (87%), Gaps = 69/556 (12%)
Strand = Plus / Plus
Query: 4 ggaattcaagaggtggaaagttttaagtgaagctgtgaggtaaatgggaagacgagagtc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagaggtggaaagttttaagtgaagctgtgaggtaaatgggaagacgagagtc 263
Query: 64 taggggtaaggttaagcaaaactaaaggttgtaaaaaattcacatggaaacctatcttat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taggggtaaggttaagcaaaactaaaggttgtaaaaaattcacatggaaacctatcttat 323
Query: 124 tatgcaacaaaacataatttttctaaagtaacgctaccgaaaatactgaagccatgggta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatgcaacaaaacataatttttctaaagtaacgctaccgaaaatactgaagccatgggta 383
Query: 184 attaaatgaaaatcctagtact-------------------------------------- 205
||||||||||||||||||||||
Sbjct: 384 attaaatgaaaatcctagtactataatttttctaaagtaacgctaccgaaaatactgaag 443
Query: 206 -------------------------------gagtgtgggatacctccctgtaaggtcaa 234
|||||||||||||||||||||||||||||
Sbjct: 444 ccatgggtaattaaatgaaaatcctagtactgagtgtgggatacctccctgtaaggtcaa 503
Query: 235 ggagttctctgaggatccaaaaacaatataaaatataggttactgtcattgcttttggtt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggagttctctgaggatccaaaaacaatataaaatataggttactgtcattgcttttggtt 563
Query: 295 gcccagcatactagatttcaagccttttgaactaaagacaaagcttagaaaaattgattt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcccagcatactagatttcaagccttttgaactaaagacaaagcttagaaaaattgattt 623
Query: 355 ggcggtgatctgaaagcttccttttggccaaaaagatttcatggtgctggaaattcctca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggcggtgatctgaaagcttccttttggccaaaaagatttcatggtgctggaaattcctca 683
Query: 415 gcaagctgtagagggagaagagtcatcaatgggcttgttttgctgtgaatcttcaagcta 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcaagctgtagagggagaagagtcatcaatgggcttgttttgctgtgaatcttcaagcta 743
Query: 475 caataatgagctacga 490
||||||| ||||||||
Sbjct: 744 caataataagctacga 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_c19.g1 MSMg01no374_c19.g1 CHROMAT_FILE:
MSMg01no374_c19.g1 PHD_FILE: MSMg01no374_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:19 2005
(490 letters)
>mm_chr4_4629383_4630273
Length = 891
Score = 864 bits (447), Expect = 0.0
Identities = 480/495 (96%), Gaps = 9/495 (1%)
Strand = Plus / Minus
Query: 1 attaggtacacaaaagcaga----aaacaatttcaatttgccaccacaaatagaagaatt 56
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 691 attaggtacacaaaagcagaaaacaaacaatttcaatttgccaccacaaatagaagaatt 632
Query: 57 cttagtgagcgctgaaaaactccagtccctatttattcaacaaatgagaaagtataatcg 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cttagtgagcgctgaaaaactccagtccctatttattcaacaaatgagaaagtataatcg 572
Query: 117 ccagcaggatgagattttatttcctttgaaagagacttccttattatagagttgagctgg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ccagcaggatgagattttatttcctttgaaagagacttccttattatagagttgagctgg 512
Query: 177 gtgccattgcttagtaggagtatttaagctgcacttaaggaaaatagcaacactgtattt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 511 gtgccattgcttagtaggagtatttaagctgcacttaaggaaaatagcaacactgtactt 452
Query: 237 agactcctcaattgtaatgtttcccatactggtaaatcaggggctttaattctgtaaaat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 agactcctcaattgtaatgtttcccatactggtaaatcaggggctttaattctgtaaaat 392
Query: 297 aactaagaatagattttttttttttgcttattctttgcatcagtgaatggaactcataat 356
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 391 aactaagaatag----tttttttttgcttattctttgcatcagtgaatggaaatcataat 336
Query: 357 ctagctcctggcaaaaagaacactgctccaatcatattatacctttctgaccaaagattg 416
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 335 ctagctcctggcaaaaagaacactgctctaatcatattatacctttctgaccaaagattg 276
Query: 417 ccctcctgtgaa-tggtgaccacaattttaattcatggggttattaagtcaaagtaaaat 475
|||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 275 ccctcctgtgaaatggtgaccacaattttaattcatgggattattaggtcaaagtaaaat 216
Query: 476 tgggcatatagagcc 490
||||||| |||||||
Sbjct: 215 tgggcatgtagagcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space: 422880
Effective search space used: 422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
