AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATTTTTATACCTTTTTTCTTTCCTAGGTGTTGACCTATATTCATTT
ATAGTTTATATAAGTGCATTAATCTCTACATTTTTAAAAGTGATGAACCA
TGTTCAATTTTGTATTTTGATGTTTCCCTTAATACTACCTAACAAATGCT
AAATGATACAGCTAAAATAAAAAATATATAATACTATACTTATAAAAGCA
TTATAATCTTAACAAATTTAAGCTACAGAGGTCTGTCATTTATGTTTTAC
TGTGGATAAAAAAAGGGTTGGATATTTTGATTTGGGCAGACAATTATTGT
GTGCATTATTATTGGGAAGATCCCGATGAACTTTAGATAATCCATTGCTA
TGCTTTTAAAATCATTTAGATAAAATAATAATTATTATGTTGCTCAAATT
TTTTATCCCTGTTTGCAATCTTAAATGAGTATTATAATTAGTCATATTAT
ACAAGGACTCCATCCAATTTGACTTTCAAATAAATTTGAACTAATTTTAA
CCTGGAACAGCACTTGAAATGTAGGTTAACACCATTAGGTTTTGCTTCTA
ATCTTATTAATGTGAAATGAATTGAAATTAAATTGAGAGATTGATGAATC
CTGTCCTTATCACAAGATCTCTATAGGAATTGACTAAACATTGAAAGTGC
CTCAGAATTACACTAAAGAAGACTCTCTTCTCTAAACCTATAAACCAAAC
CAGATACTTCTATTCCTTTGGGGGCAAAAAATTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTGATTGAT
TTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATACTGGATATTAGTCC
TCTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATGTGTTGGTGGTC
TTTTTGTCGTATTGACGGTATCTTTTGCCTTACAGAAGCTTTGCAATTTT
ATGAGGTTCCATGAGGTGCCATCCAGAAGATGTTCCAACTGGTAAGAAAG
ACACATGCTCCGCTATGTTCATAGCAGCCTTATTTATAATAGTCAGAAGC
TGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACCTAACCACAAAAGAACTCACATGCTATGTACTCACTGATAAGTG
GATATTAGCCCAGAAACTTANAAACCCATGATACCAGATTCAATTTGGAA
AACTCATAATATTTGAGAAGAACGAAGACCAAAGTGTGGACACTTTTCCC
CTTCTTTAAAATGGTAAAAAAACCCCCTGGGAAGGAGGTTTGGAGACCAA
ATTTGGAGTTTGAAACTATAGATTGGTCTTCTATAGATGTGCCTACTTGG
GGATCTCCCCCN

Query= MSMg01no374_f07.b1 MSMg01no374_f07.b1 CHROMAT_FILE:
MSMg01no374_f07.b1 PHD_FILE: MSMg01no374_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:32 2005
         (589 letters)



>mm_chr4_38262181_38263169
          Length = 989

 Score =  795 bits (411), Expect = 0.0
 Identities = 422/427 (98%), Gaps = 4/427 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattttta--taccttttttctttcctaggtgttgacctatattcatttatagt 62
           ||||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatttttagata--ttttttctttcctaggtgttgacctatattcatttatagt 262

                                                                       
Query: 63  ttatataagtgcattaatctctacatttttaaaagtgatgaaccatgttcaattttgtat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttatataagtgcattaatctctacatttttaaaagtgatgaaccatgttcaattttgtat 322

                                                                       
Query: 123 tttgatgtttcccttaatactacctaacaaatgctaaatgatacagctaaaataaaaaat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttgatgtttcccttaatactacctaacaaatgctaaatgatacagctaaaataaaaaat 382

                                                                       
Query: 183 atataatactatacttataaaagcattataatcttaacaaatttaagctacagaggtctg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atataatactatacttataaaagcattataatcttaacaaatttaagctacagaggtctg 442

                                                                       
Query: 243 tcatttatgttttactgtggataaaaaaagggttggatattttgatttgggcagacaatt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcatttatgttttactgtggataaaaaaagggttggatattttgatttgggcagacaatt 502

                                                                       
Query: 303 attgtgtgcattattattgggaagatcccgatgaactttagataatccattgctatgctt 362
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 attgtgtgccttattattgggaagatcccgatgaactttagataatccattgctatgctt 562

                                                                       
Query: 363 ttaaaatcatttagataaaataataattattatgttgctcaaattttttatccctgtttg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttaaaatcatttagataaaataataattattatgttgctcaaattttttatccctgtttg 622

                  
Query: 423 caatctt 429
           |||||||
Sbjct: 623 caatctt 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)