BAC Information

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BAC

Clone NameMSMg01-374F20
Chromosome4 (Build37)
Map Location 146,902,344 - 146,902,822
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718
Downstream geneOTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374F20.T7 (MSMg01no374_f20.b1)MSMg01-374F20.TJ (MSMg01no374_f20.g1)
ACCAG480178AG480179
length781769
length of high quality
(start - end)		520 (49 - 568)478 (75 - 552)
definitionCHROMAT_FILE: MSMg01no374_f20.b1 PHD_FILE: MSMg01no374_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:35 2005CHROMAT_FILE: MSMg01no374_f20.g1 PHD_FILE: MSMg01no374_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATACAGGATAGACACCTTACAAATGTAATGAATGTGACAAAT
GCTTTACCTGAAAATCACATCTTAGTATTCATCAGATAATTCATACAGGA
GAGAAACCTTACAAATGTAATGAATGTGACAAATTCTTTACTGAAAATGG
CTGTCTGAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAAT
GTAGTGAATGTGACAAATGCTTTACTAAAAAATCCAGTTTGAGGATTCAT
CAGAGATTTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAA
ATGTTTTATTCAAAAATGCAGTCTGATAATTCATCAGAGAATTCATACAG
GAGAGAAACCTTACAAATGTAGTGAATGTGACAAAGCTTTACTGAGAAAG
TCAATCTGAGAAGGCATCAGAGAACTCATACAGGGGAGAATTCTTACAAA
TGTATTGAATGTGACAAATGTTTTGCCCAGAAATCCTATCTTGTTTTTAA
TCACAGAAATCATACATTANAGAAGCCTTACAAATGCAGTCAATGTGACA
AATGATTTTCCCACAAACTTAGTCTGAGAATGCATCAGAGAAATCCTACA
GTAGAGAAAACTTACAAAAATGCAGTGGATGTGATAAATGCTTTACTAAT
AANGGCNGACTGAGAANTAATCCATAATTTATACTTTTTAAAAAACCCTA
CAAGCATTTTGTATGTGAAAAATGCGCACCC

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTAGATACTCTTCATTTCACGGTGC
AGATAGTTTGTGCATATTCACATGTCATGTTTCCATTGTTCTGTTTTCCA
TGTAAAAAATGTCTTCTTATTCTTCATGTGTATCTTTTTGATTGAAGTCA
TTTATTCACATGATATCACTGCAGCCCTTCCTCTCTTCCTAGTAACCCCT
CACATAAATCTCCCCTCACTCCGCTTCGAAGCAGAAGTATTCATCTGTCG
GATGTAGAGGTAGTGCAGTTCTTTTCCTAGTCTATAGGGATCCTGAAGAT
GGTGACTTTTGACTTACAGAAGCACTTAGCATTTATGAGTTTCCATTTAT
TAATTCTTGACTTTATCATCAGAGACACTGGTGTTCTGTTTAGGAAGTTG
TTTCCTGATCTAACAAGTTCAAAGCTACTCTCCACTTTTTGTTCCATTAG
ATTAAGTATGTCTGGATTTATATTGAGGTCTTTGCTTCACTTGGACTTGA
GTATTATGCAGGGTGTTAAATATGGATCTATATGCTTTTTTCTACCTAAT
GACATCCAGTTAGAACAACATTATTTCATAAAGATGTTCTCTCCCTTCCC
GGTGAAAATTTTAACCTCTTTTGCCAAAATTAAATGTTCTGTAGTTTGGG
GCATAAATCTTTGTCCCCCCTATTTTATTCTCTTTATTCCCTTACTTTTC
TTTTATCCTTTAAAAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_f20.g1 MSMg01no374_f20.g1 CHROMAT_FILE:
MSMg01no374_f20.g1 PHD_FILE: MSMg01no374_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:35 2005
         (478 letters)



>mm_chr4_146902144_146903022
          Length = 879

 Score =  919 bits (475), Expect = 0.0
 Identities = 478/479 (99%), Gaps = 1/479 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagatactcttcatttcacggtgcagatagtttgtgcatattcacatgtcatgtttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagatactcttcatttcacggtgcagatagtttgtgcatattcacatgtcatgtttcc 260

                                                                       
Query: 61  attgttctgttttccatgtaaaaaa-tgtcttcttattcttcatgtgtatctttttgatt 119
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 attgttctgttttccatgtaaaaaaatgtcttcttattcttcatgtgtatctttttgatt 320

                                                                       
Query: 120 gaagtcatttattcacatgatatcactgcagcccttcctctcttcctagtaacccctcac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtcatttattcacatgatatcactgcagcccttcctctcttcctagtaacccctcac 380

                                                                       
Query: 180 ataaatctcccctcactccgcttcgaagcagaagtattcatctgtcggatgtagaggtag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaatctcccctcactccgcttcgaagcagaagtattcatctgtcggatgtagaggtag 440

                                                                       
Query: 240 tgcagttcttttcctagtctatagggatcctgaagatggtgacttttgacttacagaagc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcagttcttttcctagtctatagggatcctgaagatggtgacttttgacttacagaagc 500

                                                                       
Query: 300 acttagcatttatgagtttccatttattaattcttgactttatcatcagagacactggtg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttagcatttatgagtttccatttattaattcttgactttatcatcagagacactggtg 560

                                                                       
Query: 360 ttctgtttaggaagttgtttcctgatctaacaagttcaaagctactctccactttttgtt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgtttaggaagttgtttcctgatctaacaagttcaaagctactctccactttttgtt 620

                                                                      
Query: 420 ccattagattaagtatgtctggatttatattgaggtctttgcttcacttggacttgagt 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccattagattaagtatgtctggatttatattgaggtctttgcttcacttggacttgagt 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 879
Length adjustment: 10
Effective length of query: 468
Effective length of database: 869
Effective search space:   406692
Effective search space used:   406692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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