BAC Information

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BAC

Clone NameMSMg01-374M07
Chromosome4 (Build37)
Map Location 11,485,600 - 11,485,941
singlet/doubletsinglet
Overlap geneLOC100039847
Upstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik
Downstream geneE130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374M07.T7 (MSMg01no374_m07.b1)MSMg01-374M07.TJ (MSMg01no374_m07.g1)
ACCAG480483AG480484
length795780
length of high quality
(start - end)
343 (77 - 419)343 (74 - 416)
definitionCHROMAT_FILE: MSMg01no374_m07.b1 PHD_FILE: MSMg01no374_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:07 2005CHROMAT_FILE: MSMg01no374_m07.g1 PHD_FILE: MSMg01no374_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGCGCGCG
GAATTCCAGGACATTACCAACTACACAGAGAAACCCTGTCTTGGAGCAAC
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAATGCCTGGCACTTGAAACCTAGCTAACTAATTAGTGCTAGTGAAG
TTATGGTTATTAGAGGAGAATTTACAACCACTAATTTACTAAACCAGCAT
AATTCCTATCTATGATCAATAAGCCTTTGTCCTTATACTCACAGGCAAGT
GTAGTCTTCACCCCTCATCAAGGATTCTTCNTTTTGCAACAGGCAGAAAT
GTCAACCAATGAAAATACATCATTGTGGAGCCCAGTCCCGATGTATACGT
CTACAAAATACTTCCCCACTTAAGGCTCAGGGAACATTGCTGAAGAAGGG
GAGGAAAGACTGTAAGAGCCTGTGAGATTGTGTCTTCTAGTAACATCAGA
AGTTATAACCGTAAAATCTCACCAACATGACTGCCCACATGTGATATGTT
CTCGGTATTCCCCTGTGTACTCGCCATATCCTTGTAGGAATACCCCCTAT
TGTCTCATTCCTTTTCATTGATCTGCCGCGACCTTGGATTATCTCTCGCA
TTCTTATTTGCCGCCTCCCCCTTCTTTTTCCTTTCTCTTCCCTTTCCCTT
TTCTCTCTTTTCCTTTATCCCTTTCCTTGCTTTTCTTCTCTTCTCCCCTT
TCCTTTTCTCTCTTTTCCTCCTTCCCCCTCCTCTCCTCTTTTCTN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTAGAGCAGAAGGATCAGCAAGACTTT
GTCTATCAAGACCTTGTCTACAATACTTTAAGATAGTGTCTTTTTTTTTT
AAGTTTAAAGGAGCTCTTCTCCTTTTCACGAGAGTCCAATAATCACGCAT
CTGTTTTTATACTCCTAGACCTTAAAAGGGCTTGTAAAACAGCGGCTGCA
ACTACTGTAGCTCAGTGTCACTTGAGTAACAGGATTTCGTGTACCTCAGT
GGTGCACACACTTCTATGATCCGAATCCTAATTTATTGATTTAAGTTGTG
AGGCTTATCGCCTCAGCTAGGACCTGAAGACTGAAACCAAATCGGTTCGT
TTTAGATCTAGCAGCCAACCGGAACCAAACCTAGACCCACGTAAAAGGAA
GTGCAAAGGTACCTGCAACGGTTGTCCAATCAGAGTCGGTGGCGGGACCA
GTACTGCACGCCGTGGTGCGTATGCTCGTCGACCGGCCCGTGGTTGTCTG
TATCTTAGTCGCTATAATTCCATCGTCTCCCACATCTAGAGTTATCCCCA
CGTACCTACTTTTCTCACGCATACTCCCCTTAATCCCGTTTTATATATTC
TATGAATACTCTACTACTCTTCACCGCATTTACTTTATCCTTTTCCCTCT
TTATTTTTACTTTCTTATCCTCTATTACTATTTATACTAACTTCTTTCTA
TCTTATATCTTCCCTTTAGTATTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_m07.g1 MSMg01no374_m07.g1 CHROMAT_FILE:
MSMg01no374_m07.g1 PHD_FILE: MSMg01no374_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:07 2005
         (343 letters)



>mm_chr4_11485400_11486143
          Length = 744

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%), Gaps = 1/342 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagagcagaaggatcagcaagactttgtctatcaagaccttgtctacaatactttaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagagcagaaggatcagcaagactttgtctatcaagaccttgtctacaatactttaaga 260

                                                                       
Query: 61  tagtgtctttttttttt-aagtttaaaggagctcttctccttttcacgagagtccaataa 119
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgtctttttttttttaagtttaaaggagctcttctccttttcacgagagtccaataa 320

                                                                       
Query: 120 tcacgcatctgtttttatactcctagaccttaaaagggcttgtaaaacagcggctgcaac 179
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tcacgcatctgtttttatactcctagaccttaaaagggcttgtaaaacaggggctgcaac 380

                                                                       
Query: 180 tactgtagctcagtgtcacttgagtaacaggatttcgtgtacctcagtggtgcacacact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactgtagctcagtgtcacttgagtaacaggatttcgtgtacctcagtggtgcacacact 440

                                                                       
Query: 240 tctatgatccgaatcctaatttattgatttaagttgtgaggcttatcgcctcagctagga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctatgatccgaatcctaatttattgatttaagttgtgaggcttatcgcctcagctagga 500

                                                     
Query: 300 cctgaagactgaaaccaaatcggttcgttttagatctagcag 341
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgaagactgaaaccaaatcggttcgttttagatctagcag 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 744
Length adjustment: 9
Effective length of query: 334
Effective length of database: 735
Effective search space:   245490
Effective search space used:   245490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)