BAC Information

Click to search

BAC

Clone NameMSMg01-374M19
Chromosome4 (Build37)
Map Location 56,913,016 - 56,913,514
singlet/doubletsinglet
Overlap geneD730040F13Rik
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1
Downstream gene6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374M19.T7 (MSMg01no374_m19.b1)MSMg01-374M19.TJ (MSMg01no374_m19.g1)
ACCAG480507AG480508
length7631,092
length of high quality
(start - end)		503 (73 - 575)---
definitionCHROMAT_FILE: MSMg01no374_m19.b1 PHD_FILE: MSMg01no374_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:09 2005CHROMAT_FILE: MSMg01no374_m19.g1 PHD_FILE: MSMg01no374_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGAT
CCGCGGAATTCTCATATTTACACTAAGCTGAGGCTTGCAAGACATTCTGA
AGGCATAGAATGTCCCTTATAAATTGTGCATTTGAGGTGGAAAAGGGATG
ACCAACCCTTGCATAGACTGCATGTCATAATATGAGCATGCGACTGGACC
AGAGCTACTGCCTTAGAAAGGCGCCAAAGAGAACTGCAGATGTCAGGGTT
CTGGTCCTAGCTGCAGCAACCCTTTGTGACTGAGCTCGTGTCTATAAAGC
TATCCACATTGCTTCCCTCACAGCACTGTCCCTGGGAACATTCAGTAGCT
GGGGCAGAACTCATCCTCCTGACCCTTTTGGTTCCTGTTTCGTTAGGAGG
AGGGACCCACTTGGGAAGAACAGACATTATAAGGGGTTTTAGTTGATGAA
GGCACAAGAAATGAAACGGAGACCTGAGAAGACATTGACATCTCCCTTTG
CTCATGTTTTACCAACAGTGTACACAACCAACTTGATAACTGCTTCTCTT
CAATTTATAGGTGATAGTGAGCTTAGTCTGTCCCAGGAAAGGCTCTGTCA
TTGATCCTTGCCTCTTCATTATTTTCATTGGGATTTCAGACTTTGGAATA
AAACTTATATTTATAGTTGAATCCAAGTTAATGATGGAAAGGAAAAAGGG
TATTTAGCTAATCTAAGGTGTGGCCTACCTTACACCCTTTCTCAGGAAAA
AAATCCCCCCAAG

CGAATGACTAGTGTGGTAGGGTCTGTGGTGGGCGGCGGCTGGCTCGGGCT
ACATTTAGGTNNACACTANTAGGAANGATCCTCACGNNAATNNTCTCTTT
CCCTGGCTTTANNGTTTANNTGTTCANNNTTATCACCNTTTGTCAAANAA
NCCATCCCCTTTTNGNNTGTNCCAAAATTAAACANNNCAACTCCCCAATA
TTCTCCAAAAAAATGGGCTTCCNTCCACATAAAAAAAGCTCCCCCCGCGG
CCACCCTTGGAAATATCTTGGAATTTCAGTTTCTCCCCCGGCATCCCCAC
CTTTTAAAATAAAAATGGCCCNNNCTTGGGACAAANGCGTCGCGCTATAA
AAAAACTTTTGTTTAGAGGGGCCCCCCCCCCAGAAAAAAAACTCTCTGGG
NAATTTTTTTTTTATCCNTGTTTCCCAACCCCCACCCGGGGGGTTTTCTC
CCCCTTCTGTGTGTCCCCCCCCCTGGGGGAAAAAAATTCTCCCACGGGGG
GAGGGGTTCTCTCTTTTCCCCNGCGGGGGGGGCCCCCGCGGTTTTTTTTT
TTTCCNNAAAAAGGGGGAGAAAACAACAAAANAAAANANATTTNTTTTNT
TTTTCTTTTTTTTTTTTCTTCCCCCCCCCCCNNAANAANNCCCCTCTCTT
TCCTCTCTCCCCTCTCCTAAAAAAATTTATTTTTTTTCTTGCCCCCCCCC
CCCCCCCGCCCTCCTTTCCTTTCTCTTTTTCTAAATATATATAATTTATT
TTTTTTTNTTTCCCCTTCTCCCCCCCCCCCCCCCNNNNCNNNATCTNCTC
CTCGAGTCNNCNGGGTCTCCTCCCCTCCCCCCCCCTCTTTCTTCNCCTCT
CTTCTTTCTTCTTTTTNCTTTCTATNNNTTTATTTTTTTTNNTTTCTCNC
NCTTTNTCNCCCCTCTNCNCCCCCCCCCCCCCCCCNNNNCCNNCNCCCCN
NNNCCCCCCTTCCTTCTTNCTCCCCCTCTTTCCNCNNNCCCCTCNNTTCT
NNNNAANNAACACCCNCNCCACCCCCCCCCNTTCTCNNCNCTCCCCCTCC
CCCTCTTTCTCATTAGGGCTTCCGTCTTGATAGGGGAGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_m19.b1 MSMg01no374_m19.b1 CHROMAT_FILE:
MSMg01no374_m19.b1 PHD_FILE: MSMg01no374_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:09 2005
         (503 letters)



>mm_chr4_56912816_56913714
          Length = 899

 Score =  884 bits (457), Expect = 0.0
 Identities = 491/503 (97%), Gaps = 4/503 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagctgaggcttgcaagacattctgaaggcatagaatgtcccttataaattgtgcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ctaagctgaggcttgcaagacattctgaaggcatagaatgtcccttataaattgtgcatt 640

                                                                       
Query: 61  tgaggtggaaaagggatgaccaacccttgcatagactgcatgtcataatatgagcatgcg 120
           |||||| ||||||| |||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tgaggtagaaaaggaatg-gcaacccttgcatagactgcatgtcataatatgagcatgcg 581

                                                                       
Query: 121 actggaccagagctactgccttagaaaggcgccaaagagaactgcagatgtcagggttct 180
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 580 actggaccagagctactgccttagaaaggtaccaaagagaactgcagatgtcagggttct 521

                                                                       
Query: 181 ggtcctagctgcagcaaccctttgtgactgagctcgtgtctataaagctatccacattgc 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggtgctagctgcagcaaccctttgtgactgagctcgtgtctataaagctatccacattgc 461

                                                                       
Query: 241 ttccctcacagcactgtccctgggaacattcagtagctggggcagaactcatcctcctga 300
           ||||||||||||||||| ||||||||||||||||||||  |||||||||| |||||||||
Sbjct: 460 ttccctcacagcactgt-cctgggaacattcagtagct--ggcagaactcgtcctcctga 404

                                                                       
Query: 301 cccttttggttcctgtttcgttaggaggagggacccacttgggaagaacagacattataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cccttttggttcctgtttcgttaggaggagggacccacttgggaagaacagacattataa 344

                                                                       
Query: 361 ggggttttagttgatgaaggcacaagaaatgaaacggagacctgagaagacattgacatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggggttttagttgatgaaggcacaagaaatgaaacggagacctgagaagacattgacatc 284

                                                                       
Query: 421 tccctttgctcatgttttaccaacagtgtacacaaccaacttgataactgcttctcttca 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tctctttgctcatgttttaccaacagtgtacacaaccaacttgataactgcttctcttca 224

                                  
Query: 481 atttataggtgatagtgagctta 503
           |||||||||||||||||||||||
Sbjct: 223 atttataggtgatagtgagctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 899
Length adjustment: 10
Effective length of query: 493
Effective length of database: 889
Effective search space:   438277
Effective search space used:   438277
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |