Query= MSMg01no374_o08.b1 MSMg01no374_o08.b1 CHROMAT_FILE:
MSMg01no374_o08.b1 PHD_FILE: MSMg01no374_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:17 2005
(249 letters)
>mm_chr4_107701460_107702108
Length = 649
Score = 474 bits (245), Expect = e-138
Identities = 248/249 (99%)
Strand = Plus / Plus
Query: 1 ggattaaaccaaattaagtttacctatcttacattataagacaaaaaccaaattatttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggattaaaccaaattaagtttacctatcttacattataagacaaaaaccaaattatttgt 260
Query: 61 acaggacatggaggcgcatgcctttaatcacagtgcaccagggtgtgtttaggaaggccc 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 acaggacatggaggcgcatgcctttaatcgcagtgcaccagggtgtgtttaggaaggccc 320
Query: 121 ggggaccaaagagtctatgtggaaaactccacagagctcaccagactgtggcatgtggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggaccaaagagtctatgtggaaaactccacagagctcaccagactgtggcatgtggga 380
Query: 181 actgggaacaacacaagcaggcacaatggccacaggtccagaacaagttacccatggagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgggaacaacacaagcaggcacaatggccacaggtccagaacaagttacccatggagt 440
Query: 241 atggacctt 249
|||||||||
Sbjct: 441 atggacctt 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no374_o08.g1 MSMg01no374_o08.g1 CHROMAT_FILE:
MSMg01no374_o08.g1 PHD_FILE: MSMg01no374_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:17 2005
(468 letters)
>mm_chr4_107893153_107894019
Length = 867
Score = 764 bits (395), Expect = 0.0
Identities = 450/475 (94%), Gaps = 16/475 (3%)
Strand = Plus / Minus
Query: 1 caggactgcctggtctatgtattcaggctagccagggttacacagtgagattttatttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 caggactgcctggtctatgtattcaggctagccagggttacacagtgagattttatttaa 735
Query: 61 aaaccaaaccaaaccaaataagatcaagccgacctgaggcaggataggcgacaggcacat 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 734 aaaccaaaccaaaccaaataagatcaagccgtcctgaggcaggataggcgacaggcacat 675
Query: 121 ---ctccacct--aggaaccctcatctccgaggcctctcagcagaggagcaggaatccag 175
| | ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 674 ggg----a--tgaaggaaccctcatctctgaggcctctcagcagaggagcaggaatccag 621
Query: 176 cgcagttaattaccaactgcttatggcctttccctctgcccagttctaaacctgcagctc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cgcagttaattaccaactgcttatggcctttccctctgcccagttctaaacctgcagctc 561
Query: 236 tctcagaatct--ctttcataaacagaagggacagttgttggttgtcatggttttacctt 293
||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctcagaatctcac---cagaaacagaagggacagttgttggttgtcatggttttacctc 504
Query: 294 ctccagccaatgcagggcccaaaccacctcagttatcaaaaggggtggcagcgtttctta 353
||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||
Sbjct: 503 ctccagccaatgcagggtccaaaccacctcagttatcaaaaggggtgggagtgtttctta 444
Query: 354 gccgtcctttgagatggaacttgagagctgtcaaaacagtgtatatggctaatgctatga 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gccgtcctttgagatggaacttgagagctgtcaaaacagtgtatatggctaatgctatga 384
Query: 414 caattagttgtagccatacctggataagtcttcctttttgagagtcctcctttta 468
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 383 caattggttgtagccatacctggataagtcttcctttctgagagtcctcctttta 329
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 867
Length adjustment: 10
Effective length of query: 458
Effective length of database: 857
Effective search space: 392506
Effective search space used: 392506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
