BAC Information

Click to search

BAC

Clone NameMSMg01-374P08
Chromosome4 (Build37)
Map Location 106,544,821 - 106,728,367
singlet/doubletdoublet
Overlap geneSsbp3
Upstream geneMap1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11
Downstream geneMrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374P08.T7 (MSMg01no374_p08.b1)MSMg01-374P08.TJ (MSMg01no374_p08.g1)
ACCAG480628AG480629
length759737
length of high quality
(start - end)		344 (73 - 416)497 (77 - 573)
definitionCHROMAT_FILE: MSMg01no374_p08.b1 PHD_FILE: MSMg01no374_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:22 2005CHROMAT_FILE: MSMg01no374_p08.g1 PHD_FILE: MSMg01no374_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,544,821 - 106,545,164)(106,727,862 - 106,728,367)
sequence
NCCCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCATGCCTTTTCCCACTGAGCCGACTCTCTAGCTCCAGATTT
CCTAAATCGAAAGAATATCGTTTGAATTATAACTCCTACTTACATAAAAA
TTGAGAACAGCTCTGAAGTCATGAGCCAAAGAAAACCTTTCGTCTTTATT
TGTTGATTATCTAAAGTAATTTGTTACAGTGATGGAAAGCTGACTAACAC
AGCATCTATGTGGGGGGCGGTGGTATTACTTTACAGGGCTGTGGCTACAT
GGGGACATAAGATTGTTCTGGACATGGGAAATGTTCAAATTTATTAAATT
GAAAGTAATTACATCTCGGGCAAGCCAACTGTAAATGCTGGTGGCCGATG
ACTCTTGGTTGAGACAGACACGACCGGGTGGCTAAGCCACAGCTGGCCAC
ACAGTACTGAAGCGCAGAGAAGATCTGGAGAGAGATGTTGACTTACATTT
ATTCTGCTTAGAGGACATTATTGAAGCCTGGGTCCATAGGACATGGTCTG
GAGATAGAGCACAGAGTATACTGAGGAGAGGTCCAGAACAGATCTACCTA
TAATAGGGAGGCTGAGGACTGTAAAGGATGGAAGAAGTAAGAAAGCTCCC
ACTGGAATGGATGAAGGAACCTGAACATCCACGGAACCCTGAGCATCCCA
CTAGCCCGAAATAATCCCTTTCCCAAAAAAAATGGGATGCTCGGTTTGTG
AAAAGCAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGACGATGCCTGAGTTTCTTCATC
CAAATCCTGAAGCTAATATCACTTCCTTTAGAGTTTTGGGTGTCTCTCCT
CTCCCCATCCCCTCTCCCACCCCTCCTTCTCCCGTGCTTTCTTCCTCCTT
CCTTTTTTCCTTTGTCTTTGAGACAGGATATTGCTATGTAGCCAGCCTTG
CCTTGCTTTGCTCTTCTCTTCCGTTAGCATCCAGAGTACTGTTGGACGTG
TGGCACACACTGTCCCTTCCTTGTTAGGGGCTTGAACCTACGAAGAACAC
TGTACCGCTGAGCCACATCTCTGCTCACCTTCCTTTCTAATTTGGAAGAT
TCTAGAGTTGCCTGTCTTCCTCCCTCATGGCAGGTACTCTAAGCCTGTGC
TGAGCTCTTACGGAATATTTTCTTCTTAATATATGAGGGTTTTATCTGTA
TATATGTCTGTGTACCAATGGATGCTTAGTGCCCAGAAAGGTTTGTTTGT
GAGCTGCCATGTGAGTGCTGGGAACTGAACCTGGCTTCTCTGGAAGAATA
TCCAGTGCTCTTACCTGCTCAGCTATTCGGGTTGTGTTAACACTCTCAGT
GACTGTATATGCTCTGAAAGAACCTCCCCTATACAGATTCCCGGCTTTCC
GGTTCATGGGACTGGGTTCCCTAAACCTTCACGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_p08.b1 MSMg01no374_p08.b1 CHROMAT_FILE:
MSMg01no374_p08.b1 PHD_FILE: MSMg01no374_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:22 2005
         (344 letters)



>mm_chr4_106544621_106545364
          Length = 744

 Score =  658 bits (340), Expect = 0.0
 Identities = 343/344 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgagccgactctctagctccagatttcctaaatcgaaagaatatcgtttgaattataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgagccgactctctagctccagatttcctaaatcgaaagaatatcgtttgaattataa 260

                                                                       
Query: 61  ctcctacttacataaaaattgagaacagctctgaagtcatgagccaaagaaaacctttcg 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ctcctacttacataaaaattgagaacagctctgaagtcatgagtcaaagaaaacctttcg 320

                                                                       
Query: 121 tctttatttgttgattatctaaagtaatttgttacagtgatggaaagctgactaacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttatttgttgattatctaaagtaatttgttacagtgatggaaagctgactaacacag 380

                                                                       
Query: 181 catctatgtggggggcggtggtattactttacagggctgtggctacatggggacataaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctatgtggggggcggtggtattactttacagggctgtggctacatggggacataaga 440

                                                                       
Query: 241 ttgttctggacatgggaaatgttcaaatttattaaattgaaagtaattacatctcgggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgttctggacatgggaaatgttcaaatttattaaattgaaagtaattacatctcgggca 500

                                                       
Query: 301 agccaactgtaaatgctggtggccgatgactcttggttgagaca 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccaactgtaaatgctggtggccgatgactcttggttgagaca 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no374_p08.g1 MSMg01no374_p08.g1 CHROMAT_FILE:
MSMg01no374_p08.g1 PHD_FILE: MSMg01no374_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:22 2005
         (497 letters)



>mm_chr4_106727555_106728447
          Length = 893

 Score =  826 bits (427), Expect = 0.0
 Identities = 483/511 (94%), Gaps = 19/511 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacgatgcctgagtttcttcatccaaatcctgaagctaatatcacttcctttagagttt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 813 agacgatgcctgagtttcttcatccaaatcctgaagctaatattacttcctttagagttt 754

                                                                       
Query: 61  tgggtgtctct-cctctcccca------------tcccctctccca-cccctccttctcc 106
           ||||||||||| ||||||||||            |||||||||||| |||| ||| ||||
Sbjct: 753 tgggtgtctctccctctccccatcccccctcccttcccctctcccacccccccctcctcc 694

                                                                       
Query: 107 cgtgctttcttcctccttccttttttcctttgtctttgagacaggatattgctatgtagc 166
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cgtgttttctt-ctccttccttttttcctttgtctttgagacaggatattgctatgtagc 635

                                                                       
Query: 167 cagccttgccttgctttgctcttctcttccgttagcatccagagtactgttggacgtgtg 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cagccttgccttgctttgctcttctcttccgttagcatccagagtactgttggacgtgtg 575

                                                                       
Query: 227 gcacacactgtcccttccttgttaggggcttgaacctacgaagaacactgtaccgctgag 286
           |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||
Sbjct: 574 gcacacactgtcccttccttgtcagaggcttgaacctacgaagaacactgtaccactgag 515

                                                                       
Query: 287 ccacatctctgctcaccttcctttctaatttggaagattctagagttgcctgtcttcctc 346
           |||||||||||||||    |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 514 ccacatctctgctca----cctttctaatttgggagattctagagttgcctgtcttcctc 459

                                                                       
Query: 347 cctcatggcaggtactctaagcctgtgctgagctcttacggaatattttcttcttaatat 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cctcatggcaggtactctaagcctgtgctgagctcttacggaatattttcttcttaatat 399

                                                                       
Query: 407 atgagggttttatctgtatatatgtctgtgtaccaatggatgcttagtgcccagaaaggt 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atgagggttttatctgtatatatgtctgtgtaccaatggatgcttagtgcccagaaaggt 339

                                          
Query: 467 ttgtttgtgagctgccatgtgagtgctggga 497
           ||| |||||||||||||||||||||||||||
Sbjct: 338 ttggttgtgagctgccatgtgagtgctggga 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 893
Length adjustment: 10
Effective length of query: 487
Effective length of database: 883
Effective search space:   430021
Effective search space used:   430021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |