BAC Information

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BAC

Clone NameMSMg01-375G03
Chromosome4 (Build37)
Map Location 34,009,949 - 34,010,314
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
Downstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375G03.T7 (MSMg01no375_g03.b1)MSMg01-375G03.TJ (MSMg01no375_g03.g1)
ACCAG480950AG480951
length766775
length of high quality
(start - end)
568 (52 - 619)366 (82 - 447)
definitionCHROMAT_FILE: MSMg01no375_g03.b1 PHD_FILE: MSMg01no375_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:57 2005CHROMAT_FILE: MSMg01no375_g03.g1 PHD_FILE: MSMg01no375_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTGTGTAGCTTGGACTGGCTTTCAACCTGTGATCCTTC
TGTTTTAGCCTTCTGACTGCTTAGATTATAGGAATATGCTACCATGTCCA
GCACCTCTCTCCCACTTTTGCAATATATTTTTTTTTCTCTTTTACACTTG
GTCTATACTTACTTTTCATTGCTGTGATTAAACACTAACCAACGTCAACT
GAAGAGAAAAAGATTTATTTGGCTTACAGTTTACAGTTTACTATTGAAGG
AAGCCAAGGCAGAAACTCGAGGTAGGAACTTGGAGCAGAAACTGAGCCAG
AGATCGTGGAGGAATGCTGCTTACTCGTTTACTCTCCATGGCTTGTTCAA
CCACCCTTCTTATACTGTCCAGGCTCATGTGCCTAGGAATGGCACCTCCC
ACAGTGGACTGGGTCCTCCTACATTAGTTAACAGTTAAAACTATGCCTCA
CAGAGACATGCAGGCCAACCTAATGGACCAATTCCTCAATAGAGATTCCC
TCTTCCAAAGTGCATTTAGGTTTGTGTCAAATTGACAAAAATGATGACAC
TATCCTCCTGTAACTAACCAGAACACACTGCATTTCTCAAGTAGAATTGA
ACAAAAGAAACGCAAACTGCTACCTTAATGGGGTGTAGAAAATGGGGTAA
ACCGCAAATAAAAACTTCTTTGGTTTTGGAATCCCCCCCCAGCTTTGGAT
GAAGTTTATCCCAGGG
NTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGAGGAGAGACTGCTCTG
AGAAGGAAAGCCTGAAAGCTTCCTACCTACAGGGCGAGCTGAAGAAAGGC
TTCCAGCAGAGCGCTAGCTGTCGGAATATCTCTGAGACTGTTTTCCACTA
GAGAGAGTAGTTTCCATTTCCATGTGAGGAGATGGCCTTTTGAGACAGAG
TCCACAGCTGAAGCAATCAAGTTGTAGGTAAATATAAACAAAGATCTGAC
AGACCAATCGTAGAGGGAGAAATGCTTAGGAGAGATGATTGGGTGGATGT
GGGATACCATTTGAGCCTTATACCTGCTGCCTAGGCACAGGCTCTGCTTT
GCCTCCTTCCACACATCTCCAGCATAAAGGCAGCTCTTTCTAAAGATTTA
CTGGAGAAAGAGGTTTCGTCGTCGTCTGCCCCTTTCTTTCAGAGGACGAA
GTTGCTATTTTTTCCCCCCCTCACAATTCTATCTAAACTATGCTTTTGGT
CCTCGCTCTTTCTTTTTTTCTCTCTCCTGACTCCCCTTACTCTTTCCCCT
TCCTTATCCATTTCCCTATTTTCCTCTCCTTATTATCTTCTCTTTTACGT
CTTTTATTTTCTTTTTCCTTTTTTTCCCTTTCTCTCTTTTTTCTCACCTC
TTCTCTCTCCGATTCTCCTCTCTTCCCATCTCCCACTTTTTTACCACTTC
TTCCTACCTTCTTTCATTTCACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_g03.g1 MSMg01no375_g03.g1 CHROMAT_FILE:
MSMg01no375_g03.g1 PHD_FILE: MSMg01no375_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:58 2005
         (366 letters)



>mm_chr4_34009749_34010514
          Length = 766

 Score =  692 bits (358), Expect = 0.0
 Identities = 364/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggaggagagactgctctgagaaggaaagcctgaaagcttcctacctacagggcgagctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 566 gggaggagagactgctctgagaaggaaagcctgaaagcttcctacctacaggtcgagctg 507

                                                                       
Query: 61  aagaaaggcttccagcagagcgctagctgtcggaatatctctgagactgttttccactag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagaaaggcttccagcagagcgctagctgtcggaatatctctgagactgttttccactag 447

                                                                       
Query: 121 agagagtagtttccatttccatgtgaggagatggccttttgagacagagtccacagctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agagagtagtttccatttccatgtgaggagatggccttttgagacagagtccacagctga 387

                                                                       
Query: 181 agcaatcaagttgtaggtaaatataaacaaagatctgacagaccaatcgtagagggagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agcaatcaagttgtaggtaaatataaacaaagatctgacagaccaatcgtagagggagaa 327

                                                                       
Query: 241 atgcttaggagagatgattgggtggatgtgggataccatttgagccttatacctgctgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 326 atgcttaggagagatgattgggtggatgtgggataccatttgagccttaaacctgctgcc 267

                                                                       
Query: 301 taggcacaggctctgctttgcctccttccacacatctccagcataaaggcagctctttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taggcacaggctctgctttgcctccttccacacatctccagcataaaggcagctctttct 207

                 
Query: 361 aaagat 366
           ||||||
Sbjct: 206 aaagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)