Query= MSMg01no375_h09.b1 MSMg01no375_h09.b1 CHROMAT_FILE:
MSMg01no375_h09.b1 PHD_FILE: MSMg01no375_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:04 2005
(455 letters)
>mm_chr4_40571809_40572663
Length = 855
Score = 806 bits (417), Expect = 0.0
Identities = 447/457 (97%), Gaps = 3/457 (0%)
Strand = Plus / Plus
Query: 1 atattaaccctccagtgaactaaatgtgaagaaagaaggtttgcacttttaagatgtgtg 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattaaccttccagtgaactaaatgtgaagaaagaaggtttgcacttttaagatgtgtg 260
Query: 61 gagtaagccttcgacttgtcataaacagaaaca-ctgcactcaaaaccaggagaggccca 119
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 261 gagtaagccttcgacttgtcataaacagaaa-agctgcactcaaaaccaggagaggccca 319
Query: 120 gattgtggcagggtagaggtgtcccaagagtcacaagttaaggaagaggatggaggtccc 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gattgtggcagggtggaggtgtcccaagagtcacaagttaaggaagaggatggaggtccc 379
Query: 180 atggctggacagaaagccctccaacactgggtggaacaaagacagaccgtcactgcctgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atggctggacagaaagccctccaacactgggtggaacaaagacagaccgtcactgcctgt 439
Query: 240 tctatgggctccacctcttttcccctgagcgttgttgataagggtggcttaaacaactga 299
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctacgggctccacctcttttcccctgagcgttgttgataagggtggcttaaacaactga 499
Query: 300 aatggatttccttgctgcctgtcagtggaactggcctcattctgagatctctctccttgg 359
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 500 aatggatttccttgctgcctgtcagtggaactggcttcatcctgagatctctctccttgg 559
Query: 360 ctgttctcttacaactccagagacagaaccataaactttgagcat-tgagatgagtgctc 418
|||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||
Sbjct: 560 ctgttctcttacaactccagagacggaaccataaactttgagcatgtgaggtgagtgctc 619
Query: 419 tgtcactgagccacatcccaagcccctgcttgttaga 455
|||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtcactgagccacatcccaagcccctgcttgttaga 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_h09.g1 MSMg01no375_h09.g1 CHROMAT_FILE:
MSMg01no375_h09.g1 PHD_FILE: MSMg01no375_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:04 2005
(400 letters)
>mm_chr4_40733469_40734271
Length = 803
Score = 733 bits (379), Expect = 0.0
Identities = 396/403 (98%), Gaps = 3/403 (0%)
Strand = Plus / Minus
Query: 1 cacatcagcttttccgtgtaaaagaatggtaatcaaaccaacccttgattctggcttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 cacatcagcttttccgtgtaaaagaatggtaatcaaaccaacccttgattctggcttcct 544
Query: 61 tggtagcaaccaggtgggccttgccagggacttgcccattttgagagtagggtgagctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tggtagcaaccaggtgggccttgccagggacttgcccattttgagagtagggtgagctct 484
Query: 121 cttctggaacctacacctctaacagcaaggcaaagcttcctggtttctgggtcctttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cttctggaacctacacctctaacagcaaggcaaagcttcctggtttctgggtcctttctt 424
Query: 181 ctgtgctctgttttcc---tctttgtcttcagaagcagggttggctgggcgcttgcctcc 237
||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctgtgctttgttctcctcttctttgtcttcagaagcagggttggctgggcgcttgcctcc 364
Query: 238 ctctgatccagctgtctctgtcttgtgtggcgctgtttgtggcttgaaagctcagctgtg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctctgatccagctgtctctgtcttgtgtggcgctgtttgtggcttgaaagctcagctgtg 304
Query: 298 atatccggcaatcccagtccttttctggctctcatgtgttgtccctatttgagaaatgct 357
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 303 atatccggcaatcccagtccctttctggctctcatgtgttgtccttatttgagaaatgct 244
Query: 358 tttactataggaggtaccccacccttccaattatgactcaagg 400
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tttactataggaggtaccccacccttccaattatgactcaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 803
Length adjustment: 9
Effective length of query: 391
Effective length of database: 794
Effective search space: 310454
Effective search space used: 310454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
