Query= MSMg01no375_i22.b1 MSMg01no375_i22.b1 CHROMAT_FILE:
MSMg01no375_i22.b1 PHD_FILE: MSMg01no375_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:11 2005
(447 letters)
>mm_chr4_16999142_16999985
Length = 844
Score = 648 bits (335), Expect = 0.0
Identities = 390/409 (95%), Gaps = 5/409 (1%)
Strand = Plus / Plus
Query: 5 gaattctctaaatgattttattgtttacctgcttttgggaagtatggctatggattctgt 64
|||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||
Sbjct: 205 gaattctctaaatgattttattgttttcctgctttagggaaggatggctatggattctgt 264
Query: 65 ctatgctctctgctttggatgactctcgtctccccattcactgtaaagatccatcaagag 124
||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||
Sbjct: 265 ctatgctctctgctttggatgactctcttctccccattcactctaaggatccatcaagag 324
Query: 125 aaaacttctgtgcaatagctcatattgaaattccttctgtcttttgagaagacatttgaa 184
||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||
Sbjct: 325 aaaacttctgtgcaatagctcatattgcaattccttctgtcttctgaaaagacatttgaa 384
Query: 185 ttttataaaaatgattcctgttttattgacacttttctagtataaggagactggggttga 244
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 ttttataaaaatgattcctgttttattgacacttttctagtataagga--ctggggttga 442
Query: 245 gggggggacctgggcagtaggacatcttgctcattatcatcctgactat-ggaaagatgc 303
| |||| ||||||||||||||||||||||||| |||||||||||||||| |||| |||||
Sbjct: 443 gtgggg-acctgggcagtaggacatcttgctctttatcatcctgactataggaa-gatgc 500
Query: 304 tattaataaagatgagaagtcctacatgaagctacaagaattatgtatatctaatgaaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattaataaagatgagaagtcctacatgaagctacaagaattatgtatatctaatgaaat 560
Query: 364 attttctggaaactagattaagattagacagttctaggaaatagaaagc 412
|||||||||||||||||||||||||| |||||| |||||||||| ||||
Sbjct: 561 attttctggaaactagattaagattaaacagttttaggaaataggaagc 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 844
Length adjustment: 10
Effective length of query: 437
Effective length of database: 834
Effective search space: 364458
Effective search space used: 364458
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_i22.g1 MSMg01no375_i22.g1 CHROMAT_FILE:
MSMg01no375_i22.g1 PHD_FILE: MSMg01no375_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:11 2005
(463 letters)
>mm_chr4_17161998_17162860
Length = 863
Score = 859 bits (444), Expect = 0.0
Identities = 459/464 (98%), Gaps = 2/464 (0%)
Strand = Plus / Minus
Query: 1 accattgcctgcatatgcatattcctggtttaaaggattttacttggaagctatttcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 accattgcctgcatatgcatattcctggtttaaaggattttacttggaagctatttcctt 604
Query: 61 gaaggagatatgtaagttttaaatggagcatgaagagaaaaaaagaaatttaagagagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gaaggagatatgtaagttttaaatggagcatgaagagaaaaaaagaaatttaagagagtg 544
Query: 121 tg-ctgaaagaaaggatgtgacaaagaaagaattgcaaatcatgtcacatcctgatatta 179
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tgtc-aaaagaaaggatgtgacaaagaaagaattgcaaatcatgtcacatcctgatatta 485
Query: 180 taaaagaaaaaattgaaagcattttggaagccccatatctttgttgatcttgagaggaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 taaaagaaaaaattgaaagcattttggaagccccatatctttgttgatcttgagaggaat 425
Query: 240 acgtcatggagtgatgggaaataaagttgattgagagagattctaaggcaagaatgtaat 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 acgtcatggagtgatgagaaataaagttgattgagagagattctaaggcaagaatgtaat 365
Query: 300 gtgagaaagagaatatgaaatgacaacccttctctataaaagattaagattacattaaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtgagaaagagaatatgaaatgacaacccttctctataaaagattaagattacattaaca 305
Query: 360 agctttcagggtacagatttgttttgttttctgtaaaataaaagagtccagagactgcct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agctttcagggtacagatttgttttgttttctgtaaaataaaagagtccagagactgcct 245
Query: 420 gtgcaatagcaaactgaaggttacaatccatagaattgctcaaa 463
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 244 gtgcaatagtaaactgaaggttacaatccatagaattgctcaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
