Query= MSMg01no375_j20.b1 MSMg01no375_j20.b1 CHROMAT_FILE:
MSMg01no375_j20.b1 PHD_FILE: MSMg01no375_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:15 2005
(489 letters)
>mm_chr4_76120112_76121000
Length = 889
Score = 909 bits (470), Expect = 0.0
Identities = 482/486 (99%)
Strand = Plus / Plus
Query: 4 ggaattcaatgagcagtgttactaaatttcatcagtcaggtccataaacctgagtataat 63
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatgggcagtgttactaaatttcatcagtcaggtccataaacctgagtataat 263
Query: 64 tgaacaaagggcacacacatataatttcttgcaagcacacacctgctgtgagccaagtca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgaacaaagggcacacacatataatttcttgcaagcacacacctgctgtgagccaagtca 323
Query: 124 gtatccctaaggtcagacttagttgtagttagacctagatgaaccctgatatgtcactgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtatccctaaggtcagacttagttgtagttagacctagatgaaccctgatatgtcactgc 383
Query: 184 ttgaaagtgggaagtcagtatggagcattttcttccaccctgagagtggttctggaaagt 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgaaagtgggaagtcagtatggtgcattttcttccaccctgagagtggttctggaaagt 443
Query: 244 ccccattgaggacactcttctgtgtagatctcctgtttgtgggtccaaacccagggaaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccccattgaggacactcttctgtgtagatctcctgtttgtgggtccaaacccagggaaga 503
Query: 304 tcttctcactaagtattgatctacatcttctacagtagtgcagaaatggaagtggagagc 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcttctcactaagtattgacctacatcttctacagtagtgcagaaatggaagtggagagc 563
Query: 364 ctaacaaagcccaatacaagcagatacaagaaagaatgtagcatgcccaagatctaagat 423
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 564 ctaacaaagcccaatacaagcagatacaagaaagaatgtagcatgctcaagatctaagat 623
Query: 424 tcttggtgttgggagggctatgatttggatgactcagaagccaaaggaaatgaaataatt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcttggtgttgggagggctatgatttggatgactcagaagccaaaggaaatgaaataatt 683
Query: 484 ttagga 489
||||||
Sbjct: 684 ttagga 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_j20.g1 MSMg01no375_j20.g1 CHROMAT_FILE:
MSMg01no375_j20.g1 PHD_FILE: MSMg01no375_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:15 2005
(471 letters)
>mm_chr4_76257510_76258380
Length = 871
Score = 770 bits (398), Expect = 0.0
Identities = 453/482 (93%), Gaps = 21/482 (4%)
Strand = Plus / Minus
Query: 1 ctcttcacaacattagtacagaaaaaccttgctccagtttttaataagcagtaacgcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ctcttcacaacattagtacagaaaaaccttgctccagtttttaataagcagtaacg---- 645
Query: 61 ataacacaatcaattttgctaagagctttcacacaaacaggaagaaatctaagctttcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ------caatcaattttgctaagagctttcacacaaacaggaagaaatctaagctttcca 591
Query: 121 aaa--aaacaa----aaaaaacaaaa----aaacaaacaaacaaac-aaacaaaaaaaaa 169
||| |||||| ||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 590 aaacgaaacaaaaacaaaaaacaaaaacataaacaaacaaacaaacaaaaaaaaaaaaaa 531
Query: 170 caggcaaatacatcttacaagaatttgtcctggaataggaaaacttggaaaggtccatgt 229
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 530 cagggaaatacatcttacaagaatttgtcctggaataggaaaacttggaaaggtcaatgt 471
Query: 230 ggtcataattgctggttgacttctttcacacatcatggttgtgaatgatatgtgacagga 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ggtcataattgctggttgacttctttcacacatcatggttgtgaatgatatgtgacagga 411
Query: 290 aggagtttgctctttggagtaaggaacctgaataaaaataatgaatgagggcagggctgc 349
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 410 aggagtttactctttggagtaaggaacctgaataaaaataatgaatgagggcagggctac 351
Query: 350 tcagaggtatggtacaggagaaggtttagtgtagatatgagggaaagcacagccagaggc 409
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcggaggtatggtagaggagaaggtttagtgtagatatgagggaaagcacagccagaggc 291
Query: 410 atctgacagagcccagactgaatgaggtcataaaaaagtttgtgcaaatattgagagagg 469
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 290 atctgacagagcccagactgaatgaggtcataaaaaagtttgtgcaaatattaagagagg 231
Query: 470 aa 471
||
Sbjct: 230 aa 229
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
