Query= MSMg01no375_k05.b1 MSMg01no375_k05.b1 CHROMAT_FILE:
MSMg01no375_k05.b1 PHD_FILE: MSMg01no375_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:17 2005
(487 letters)
>mm_chr4_79343508_79344393
Length = 886
Score = 835 bits (432), Expect = 0.0
Identities = 469/484 (96%), Gaps = 7/484 (1%)
Strand = Plus / Minus
Query: 7 gaattcatctcaa---ttccaatgttttattttttaactagcatctttcaagtcctgaca 63
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gaattcatctcaagggt---aatgttttattttttaactagcatctttcaagtcctgaca 630
Query: 64 agtccagtttttataatgtcatgttaaaagaacaacagcaacaaaacattgtcactcttt 123
|| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 629 agcccagtttttataatgtcatgttaaaagaacaacaacaaccaaacattgtcactcttt 570
Query: 124 ctgccttaagaagaacaaggtgtgttaaaatactgctgtttgcatctatttatactccat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ctgccttaagaagaacaaggtgtgttaaaatactgctgtttgcatctatttatactccat 510
Query: 184 ggttttcagagacttacattcccacacactgttaaaaagttttgcggtgcgatttggaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggttttcagagacttacattcccacacactgttaaaaagttttgcggtgcgatttggaat 450
Query: 244 atgaggcctatgcgtttgtgctgaagagataaattgtcatgggccagcatgcagaatctc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atgaggcctatgcgtttgtgctgaagagataaattgtcatgggccagcatgcagaatctc 390
Query: 304 agtccccagttttagctgcataacacagtggcagtggaggtcagcgggtttgagcagaca 363
||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 389 agtcctcagttt-agctgcataacacggtggcagtggaggtcagcgggtttgagcagaca 331
Query: 364 ttggtttccactctgagatgaagagcctatcagagagcaaataaagaaacatctgccaca 423
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 330 ttggtttccactctgagatgaagagcctatcagagagcaaataacgaaacatctgccatg 271
Query: 424 ctgactaatggctttgcctactcagatccatcactgtagccaagtaagatctactattta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctgactaatggctttgcctactcagatccatcactgtagccaagtaagatctactattta 211
Query: 484 ccca 487
||||
Sbjct: 210 ccca 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 886
Length adjustment: 10
Effective length of query: 477
Effective length of database: 876
Effective search space: 417852
Effective search space used: 417852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_k05.g1 MSMg01no375_k05.g1 CHROMAT_FILE:
MSMg01no375_k05.g1 PHD_FILE: MSMg01no375_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:17 2005
(478 letters)
>mm_chr4_79175246_79176123
Length = 878
Score = 862 bits (446), Expect = 0.0
Identities = 471/482 (97%), Gaps = 6/482 (1%)
Strand = Plus / Plus
Query: 1 aatttttaaattttctcatgcttgtaattctgtcaaaaacatcttttgtttataaataac 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 199 aatttttaaattttctcatgcttgtaattctgtcaaaaatatcttttgtttataaataac 258
Query: 61 tcccagaataaaacaataactaattaaacttgacatactatatatacatatacatatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 259 tcccagaataaaacaataactaattaaacttgacatactatatatacatatac--atata 316
Query: 121 tatatacatatatatata----tttccataaatactcaagaaaaaataacacagtatttc 176
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tatatacatatatatatatatgtttccataaatactcaagaaaaaataacacagtatttc 376
Query: 177 aaatataattaaggataaacgcattcttcctaatactatataaaacatagacttatatga 236
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaatataattaaggataaactcattcttcctaatactatataaaacatagacttatatga 436
Query: 237 atgatagaaaagaaaggaaaatacaatatctaagaatgtaatattataatatttacaaat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atgatagaaaagaaaggaaaatacaatatctaagaatgtaatattataatatttacaaat 496
Query: 297 ttcaattatggcttttcattctttttgtttttgttcttgtttgtttgtttgattgttttt 356
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttcaatcatggcttttcattctttttgtttttgttcttgtttgtttgtttgattgttttt 556
Query: 357 ctccatatgctggatatcaagtgtgtttgaggagaaaccgggaaagctgattacatatga 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctccatatgctggatatcaagtgtgtttgaggagaaaccgggaaagctgattacatatga 616
Query: 417 aatgtaaataaacaaattattcagtaaaatacaaaacaaagcagaatctcctcattttat 476
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 617 aatgtaaataaacaaattatccagtaaaatagaaaacaaagcagaatctcctcattttat 676
Query: 477 ca 478
||
Sbjct: 677 ca 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
