BAC Information

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BAC

Clone NameMSMg01-375L05
Chromosome4 (Build37)
Map Location 47,289,967 - 47,435,259
singlet/doubletdoublet
Overlap geneCol15a1, Tgfbr1, LOC666236
Upstream geneLOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2, Anks6, LOC435781, Galnt12
Downstream geneLOC666473, Alg2, Sec61b, LOC100040788, Nr4a3, Stx17, Txndc4, Invs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375L05.T7 (MSMg01no375_l05.b1)MSMg01-375L05.TJ (MSMg01no375_l05.g1)
ACCAG481191AG481192
length774767
length of high quality
(start - end)		438 (70 - 507)430 (83 - 512)
definitionCHROMAT_FILE: MSMg01no375_l05.b1 PHD_FILE: MSMg01no375_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:22 2005CHROMAT_FILE: MSMg01no375_l05.g1 PHD_FILE: MSMg01no375_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,289,967 - 47,290,404)(47,434,880 - 47,435,259)
sequence
NTTTAGTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCACCACACATAATGCCATCCTGGCTTATTTGGTTGCGT
GTACAATTTTAGGTTTGAAACCATTTGCCCCAGAGCTTTGAAGGTAAGCA
TTCCGTTATGGAGGATGAGCTCAGATTTCACTCCCAGTCCCAGCCTACCT
AAAGCCACCGCCTCTTCCCTTGGCAGGTTTTAGGAGTCACTTCCCTTTGC
TTGGTGTGCTGAAATCCCTTGGTGCATCGTCTCTGGATGTGGATTCTTTA
AAGCATGTATTCTCCTACTTGGTGCTAAAGAGCCTTGGGGTGGGGTGGCG
TTTAATCTGGGGGCCTCTGGGTTGTGAAGCTTCTGTGATTTGTTTTTCCA
GAAATGTTCAACATAGACCTCAGCCTTCTGCTAAGGTCAAGTGCAGGAAT
GTCAAGTTACTGTCCGCTTGCGTGCTGCTTCCTCCATTCTCTTTATTCTT
TATTCTGTTTGGGTCAGAATTGGAATTTCTGATTATCCTCCTAGCCTCTA
TTTGGGCATCCTTCCTATCGCTTTTATTCATTTGTGATGGGTTTCAAAGC
ATTTCTGCATCCTGGTTCTTTGGTCCATTCTAGTTGGAATTCCTCCCCAG
AAGTGCTTCCTATTTTTTTTTTCTTTTCAAGAGTTCTTCTCTTTTATCCC
CCTCAACATTCCTTCGTTTCCGTGGTCCCTCATGAATCCCCCCCTTTTAA
TAATTTTTTATTTATATTTTTATG

NNNNCCCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTCAGCAGGAACA
CAACAAGGTGCAGAGGGCTGTTACCAGCCATCCTCCTCCACAGAGAGTGC
AACCACATCGTTGACCTGGAAACAAAGAGGGTGCCATGAGTCTGTGTGAC
AATTTCTTTTCTTTGTGCTAAGACAAAACACGGGACAAAGATCAATTTCT
CAAAGGGTTTAAGGCCCACAAGCTGGCTCAGTAGGTAAAGCAACTGTCTC
CAAGCCTGACAACCTGAGGTGGATGCCCAGAACTCATGTACAGGTGGAGA
AGAGCATAAAATTATCCTCTGACCGCTACCGGTCACGCACCCTCCTCCCA
ATAACATTGAATAATAAAAAATGTTTTGGAAGGGTTTATTTGGGCTTTCT
CATGGTGAGAAAAGCCCGTGGCAGGAGACAGGCAGCAGGTCACGCTGCGT
CCACAGTTTATAAGATCGTGGCTGGGAATAGGCTTCATGCTGTAATCTCT
CCAGGCCCAGCTCCAGTGACCCACAGCATATGAGCTGGAGATTGGGGTTT
AAAAATAAGAACTTACTTTGGGAACCCCCAAATCTCAATCTTAATACTGG
TATACTTATCTGTTTGTACATATATTCGAGGTTTTCCTTATATGGGTGCC
CTATTGGGCTCCCTTTTAAAATATTATGTCCGGGCCATATTTGTGCGACA
TTTTTTCTCCTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_l05.b1 MSMg01no375_l05.b1 CHROMAT_FILE:
MSMg01no375_l05.b1 PHD_FILE: MSMg01no375_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:22 2005
         (438 letters)



>mm_chr4_47289767_47290604
          Length = 838

 Score =  824 bits (426), Expect = 0.0
 Identities = 435/438 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataatgccatcctggcttatttggttgcgtgtacaattttaggtttgaaaccatttgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataatgccatcctggcttatttggttgcgtgtacaattttaggtttgaaaccatttgcc 260

                                                                       
Query: 61  ccagagctttgaaggtaagcattccgttatggaggatgagctcagatttcactcccagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagagctttgaaggtaagcattccgttatggaggatgagctcagatttcactcccagtc 320

                                                                       
Query: 121 ccagcctacctaaagccaccgcctcttcccttggcaggttttaggagtcacttccctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagcctacctaaagccaccgcctcttcccttggcaggttttaggagtcacttccctttg 380

                                                                       
Query: 181 cttggtgtgctgaaatcccttggtgcatcgtctctggatgtggattctttaaagcatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttggtgtgctgaaatcccttggtgcatcgtctctggatgtggattctttaaagcatgta 440

                                                                       
Query: 241 ttctcctacttggtgctaaagagccttggggtggggtggcgtttaatctgggggcctctg 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ttctcctacttggtgctaaagagccttggggtggagtggcgtttaatctgggggcctctg 500

                                                                       
Query: 301 ggttgtgaagcttctgtgatttgtttttccagaaatgttcaacatagacctcagccttct 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 ggttgtgaagcttctgtgatttgtttttccagaaatgttcaacgtagacctcagccttct 560

                                                                       
Query: 361 gctaaggtcaagtgcaggaatgtcaagttactgtccgcttgcgtgctgcttcctccattc 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 gctaaggtcaagtgcaggaatgtcaagttactgtctgcttgcgtgctgcttcctccattc 620

                             
Query: 421 tctttattctttattctg 438
           ||||||||||||||||||
Sbjct: 621 tctttattctttattctg 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_l05.g1 MSMg01no375_l05.g1 CHROMAT_FILE:
MSMg01no375_l05.g1 PHD_FILE: MSMg01no375_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:23 2005
         (430 letters)



>mm_chr4_47434880_47435709
          Length = 830

 Score =  688 bits (356), Expect = 0.0
 Identities = 374/380 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtcagcaggaacacaacaaggtgcagagggctgttaccagccatcctcctccaca 60
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 380 actttgtcagcaggaacacaacaaggtgcagagggctgataccagccgtcctcctccaca 321

                                                                       
Query: 61  gagagtgcaaccacatcgttgacctggaaacaaagagggtgccatgagtctgtgtgacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gagagtgcaaccacatcgttgacctggaaacaaagagggtgccatgagtctgtgtgacaa 261

                                                                       
Query: 121 tttcttttctttgtgctaagacaaaacacgggacaaagatcaatttctcaaagggtttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttcttttctttgtgctaagacaaaacacgggacaaagatcaatttctcaaagggtttaa 201

                                                                       
Query: 181 ggcccacaagctggctcagtaggtaaagcaactgtctccaagcctgacaacctgaggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggcccacaagctggctcagtaggtaaagcaactgtctccaagcctgacaacctgaggtgg 141

                                                                       
Query: 241 atgcccagaactcatgtacaggtggagaagagcataaaattatcctctgaccgctaccgg 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 140 atgcccagaactcatgtacaggtagagaagagcataaaattatcctctgaccgctactgg 81

                                                                       
Query: 301 tcacgcaccctcctcccaataacattgaataataaaaaatgttttggaagggtttatttg 360
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 80  tcacgcaccctcctcccaataatattaaataataaaaaatgttttggaagggtttatttg 21

                               
Query: 361 ggctttctcatggtgagaaa 380
           ||||||||||||||||||||
Sbjct: 20  ggctttctcatggtgagaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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