BAC Information

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BAC

Clone NameMSMg01-376C19
Chromosome4 (Build37)
Map Location 53,555,590 - 53,652,520
singlet/doubletdoublet
Overlap geneSlc44a1, Fsd1l
Upstream gene4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197
Downstream geneLOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280, LOC666901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376C19.T7 (MSMg01no376_c19.b1)MSMg01-376C19.TJ (MSMg01no376_c19.g1)
ACCAG481554AG481555
length751712
length of high quality
(start - end)		488 (47 - 534)448 (78 - 525)
definitionCHROMAT_FILE: MSMg01no376_c19.b1 PHD_FILE: MSMg01no376_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:00 2005CHROMAT_FILE: MSMg01no376_c19.g1 PHD_FILE: MSMg01no376_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,652,039 - 53,652,520)(53,555,590 - 53,556,037)
sequence
NCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTGGTTAGGAGCACTGGATGCTCTTTCAGAGGACCCAGGTTCA
ATTCCCAGCACCCATATGACTGCGCAGAGGGGTCTGCCACCCAAGTCCCA
GGGAATCACCATGCTCTTCTGGCCTCCTCAGGCAGCAGGGATACATATGG
AGCACAAACATACATTCAAACAAAGCAGCCATACACATTTTAAATGAAGA
ATCTTATAAGATACTAATATCTTAATTTTCTAAAGATGGCATGAAGAAGT
TCAAGTAGCTCTTCTAGAAGCTCAGAATTAATATGCCACAAGGCAGGATT
CAGATGAAAACAGTTAATATTAACTATGACACTGCTGTCCAATAAGGAAA
TTATCAGAGATTCATGCATCACAAATATTACTAAGATTGTGCTTCAAAAT
TACAAGAAAAACCCCTGGAGCTGCCAAGCAGGTACTGCAGGTACCACCTA
CAGAGGGACAGTGCCTTCTGTCTCACACATGGCTGGTATGTGCCAGAGCT
TTCAGTCTAAAGCAGGACATCATTATGGCAGAAAGGCTGAACAGGGACTG
CTCATGGNCCTGACCANGAANCCCAAAAGAGAGTGTGGCAGCCCCTTGAC
CTGAAGACTCCCCGCCAGGTCTCATCTACGGGGCTAAAACTGGGGGAAAA
TCTTTTAAAAGGGGCTTTGGGGGATTTCCAAAACAAGAGCAAGAACCCTG
G

NCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATAAATTTGTTGACAGAGAT
CTAGTAGCCATCAAATCTTAACAAGAGGGGGCATCAATAACTCATGCTCA
CTTCATGACTTTTAGCAGATCTTAGCAATTTGGATCTAGACCAGCTAAGC
CCTAAAACATCTTAATTTTGAGAGGGTCATGGATTTGAAGTGGATTCTCT
ATTTACTCGGATATTTGGATCCATTTTGAAATGAATTAATAAATTCATAG
CCATTGTGCCTTGCTTCACAGTCCAGAGTCATCCTGGACTACTATTGAGT
TCCTGATAGTGGAGCGCAGGACCAAATATTAAGATATGGGTGTTAACTGT
GAGAGGTGAGGGTAATGATGGTGACCTTGTGTGAAGCATCTCTGTCCAGT
CAGCTCATACTCAGTAAAGGAATAGGACAGTTATTTCTATGCTTAGAGAA
TAGTTTACATCTATAATTACTGGGTAAATAAAACCCTGGGAAGGAAGGAA
GGAAGTAAGGAAAGGGGAGGAGAGGNTTNTTTNTTATTTTATTTTTTTTT
TTTTTTTTTTTTNTTTTTTATTAGTTTTATTATTTATTTTTATTTATATA
TTATTTAAGTGTGATATTATTTTTTTTTAGTGTTAATTATGTTATTATAT
ATATTCAGTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_c19.b1 MSMg01no376_c19.b1 CHROMAT_FILE:
MSMg01no376_c19.b1 PHD_FILE: MSMg01no376_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:00 2005
         (488 letters)



>mm_chr4_53651647_53652534
          Length = 888

 Score =  909 bits (470), Expect = 0.0
 Identities = 479/482 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   attcattggttaggagcactggatgctctttcagaggacccaggttcaattcccagcacc 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 attcattggttaggagcactggatgctctttcagaggacccaggttcaattcccagcacc 815

                                                                       
Query: 67  catatgactgcgcagaggggtctgccacccaagtcccagggaatcaccatgctcttctgg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 catatgactgcgcagaggggtctgccacccaagtcccagggaatcaccatgctcttctgg 755

                                                                       
Query: 127 cctcctcaggcagcagggatacatatggagcacaaacatacattcaaacaaagcagccat 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 cctcctcaggcagcagggatacatatggagcacaaacatacattcaaacaaagcagccat 695

                                                                       
Query: 187 acacattttaaatgaagaatcttataagatactaatatcttaattttctaaagatggcat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 acacattttaaatgaagaatcttataagatactaatatcttaattttctaaagatggcat 635

                                                                       
Query: 247 gaagaagttcaagtagctcttctagaagctcagaattaatatgccacaaggcaggattca 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gaagaagttcaagtagctcttctagaagctcagaattaatatgccacaaggcaggattca 575

                                                                       
Query: 307 gatgaaaacagttaatattaactatgacactgctgtccaataaggaaattatcagagatt 366
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 574 gatgaaaacagttaatattaactatgacactgctgtccgataaggaaatgatcagagatt 515

                                                                       
Query: 367 catgcatcacaaatattactaagattgtgcttcaaaattacaagaaaaacccctggagct 426
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 catgcatcacaaatgttactaagattgtgcttcaaaattacaagaaaaacccctggagct 455

                                                                       
Query: 427 gccaagcaggtactgcaggtaccacctacagagggacagtgccttctgtctcacacatgg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gccaagcaggtactgcaggtaccacctacagagggacagtgccttctgtctcacacatgg 395

             
Query: 487 ct 488
           ||
Sbjct: 394 ct 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no376_c19.g1 MSMg01no376_c19.g1 CHROMAT_FILE:
MSMg01no376_c19.g1 PHD_FILE: MSMg01no376_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:00 2005
         (448 letters)



>mm_chr4_53555390_53556237
          Length = 848

 Score =  851 bits (440), Expect = 0.0
 Identities = 446/448 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcataaatttgttgacagagatctagtagccatcaaatcttaacaagagggggcatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcataaatttgttgacagagatctagtagccatcaaatcttaacaagagggggcatcaa 260

                                                                       
Query: 61  taactcatgctcacttcatgacttttagcagatcttagcaatttggatctagaccagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taactcatgctcacttcatgacttttagcagatcttagcaatttggatctagaccagcta 320

                                                                       
Query: 121 agccctaaaacatcttaattttgagagggtcatggatttgaagtggattctctatttact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccctaaaacatcttaattttgagagggtcatggatttgaagtggattctctatttact 380

                                                                       
Query: 181 cggatatttggatccattttgaaatgaattaataaattcatagccattgtgccttgcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggatatttggatccattttgaaatgaattaataaattcatagccattgtgccttgcttc 440

                                                                       
Query: 241 acagtccagagtcatcctggactactattgagttcctgatagtggagcgcaggaccaaat 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 acagtccagagtcatcctggactactattgagttcctgatagtggagcacaggaccaaat 500

                                                                       
Query: 301 attaagatatgggtgttaactgtgagaggtgagggtaatgatggtgaccttgtgtgaagc 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 attaagatatgggtgttaactgtgagaggtgagggtaatgacggtgaccttgtgtgaagc 560

                                                                       
Query: 361 atctctgtccagtcagctcatactcagtaaaggaataggacagttatttctatgcttaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctctgtccagtcagctcatactcagtaaaggaataggacagttatttctatgcttaga 620

                                       
Query: 421 gaatagtttacatctataattactgggt 448
           ||||||||||||||||||||||||||||
Sbjct: 621 gaatagtttacatctataattactgggt 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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