BAC Information

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BAC

Clone NameMSMg01-376D06
Chromosome4 (Build37)
Map Location 132,864,605 - 132,865,157
singlet/doubletsinglet
Overlap geneWdtc1
Upstream geneLOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018
Downstream geneSlc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376D06.T7 (MSMg01no376_d06.b1)MSMg01-376D06.TJ (MSMg01no376_d06.g1)
ACCAG481576AG481577
length742759
length of high quality
(start - end)		556 (42 - 597)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no376_d06.b1 PHD_FILE: MSMg01no376_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:02 2005CHROMAT_FILE: MSMg01no376_d06.g1 PHD_FILE: MSMg01no376_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTAGTAAGGTATAGCGAGAATTATCATCCACTCAGTTCCTATCTGGAGA
GGAGTCAGAAAAAAGGGCTCCTTAGGCAGCGCAGCTCGGCGTGCATGGTG
ACCACTCCGACTGCACGAAGTGCAGATCCTGACTGAACTTCTGTGCTGAT
CGGCTGCTGCTCGATAGCCAGGCTCACTTTGGTGAGCTCTTACAAACTTA
GTGATACGAGAGGGAGAAGGCGCGCTGACACCCAGGCCATTCTCCTTCAG
TAGCCAGCTCTCTCCTATCTCCTGCCAATCATTTGATCTCTTGTGAGCAG
TTCCTGCCTCATGCTGGAGACCGCATTTTGATCACGGGGGCAGCTGACTC
CAAGGTGCACGTCCACGACCTTACGGTAAAGGAGACGATCCACATGTTTG
GAGACCACACAAACCGGGTGAAGCGCATTGCCACGGCGCCCATGTGGCCT
AACACGTTCTGGAGCGCCGCAGAGGATGGGCTTATCCGGTAAGGATCTCT
GCATGAAATTACTGTATGTGCTCCGCTTCAGTGGCTCTGCTGCAATGCTT
CCTTCCACCTGGTCTTTCCCCCAGCAAACAGGAAGTGGGTCTCCTCCCTG
TTTCAGTGTCCTGTGTGTTTGCCTGTTTGCCCTGTTTCCCTTCCAACACG
GATGGCATTATTACCCTTCTTTCCTTTTCCCTTTTGGGGACG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCCCTGTCTCA
AAACAACACCAACCACCACCAACAACAAATAACAAGAAGTGTCCGAGTGA
GTTCCAGGCCACCTGGTCTACACTAGCAAGTTCCAGGNCCAGCCAGGNGC
TATGTAGNTGAATCCCTGGTCTCAAAACAAACAAACAAACAAAAAAACAA
AAAAACAACAACAAACAAACAAAAACAGATGAAGCAAAGAGCAGACCACC
CTGGGCACTGTGACTGTGTAGGAGATGATGTTTCATCCTGAGGGTAGTGG
GTCATAAGAAAGGGGATTAAGGCAGGGGTGGGGGAGGGGATAAACAGGCT
TTATGACTAAAAATTAACTTTCTCTGCTATGCTCCCAACAACAAGAATAT
TGCCTATTTCCTCATGGATTCTTTTGTATAAGTAATTCCAAGGTTAAAAC
GGTTTTCCCTCGTGTCACCCAAATATTGTGCTCGGCTTGTTTTTTCTTCC
CCTTTTGTCACCATCAATGTTTTTTTTTTTATCTTGTTAAAGTATTTTTT
TTTCCTTGTTTGCTCATTTCGTGTTTTTCCTTTCTTTGCTATGCTTTCTT
CTTGGTTCCTCCTACGCACCCTCCTTTACCATTCCCTCTCTTTTTTTTTT
CTTATCTATGTATCTTTCGTTACTATAATGCTCAATGTATATCCCTCCCC
CTTCGCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_d06.b1 MSMg01no376_d06.b1 CHROMAT_FILE:
MSMg01no376_d06.b1 PHD_FILE: MSMg01no376_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:02 2005
         (556 letters)



>mm_chr4_132864402_132865357
          Length = 956

 Score = 1062 bits (549), Expect = 0.0
 Identities = 552/553 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttagtaaggtatagcgagaattatcatccactcagttcctatctggagaggag 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ggaattcttagtaagggatagcgagaattatcatccactcagttcctatctggagaggag 697

                                                                       
Query: 64  tcagaaaaaagggctccttaggcagcgcagctcggcgtgcatggtgaccactccgactgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tcagaaaaaagggctccttaggcagcgcagctcggcgtgcatggtgaccactccgactgc 637

                                                                       
Query: 124 acgaagtgcagatcctgactgaacttctgtgctgatcggctgctgctcgatagccaggct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 acgaagtgcagatcctgactgaacttctgtgctgatcggctgctgctcgatagccaggct 577

                                                                       
Query: 184 cactttggtgagctcttacaaacttagtgatacgagagggagaaggcgcgctgacaccca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cactttggtgagctcttacaaacttagtgatacgagagggagaaggcgcgctgacaccca 517

                                                                       
Query: 244 ggccattctccttcagtagccagctctctcctatctcctgccaatcatttgatctcttgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggccattctccttcagtagccagctctctcctatctcctgccaatcatttgatctcttgt 457

                                                                       
Query: 304 gagcagttcctgcctcatgctggagaccgcattttgatcacgggggcagctgactccaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gagcagttcctgcctcatgctggagaccgcattttgatcacgggggcagctgactccaag 397

                                                                       
Query: 364 gtgcacgtccacgaccttacggtaaaggagacgatccacatgtttggagaccacacaaac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtgcacgtccacgaccttacggtaaaggagacgatccacatgtttggagaccacacaaac 337

                                                                       
Query: 424 cgggtgaagcgcattgccacggcgcccatgtggcctaacacgttctggagcgccgcagag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cgggtgaagcgcattgccacggcgcccatgtggcctaacacgttctggagcgccgcagag 277

                                                                       
Query: 484 gatgggcttatccggtaaggatctctgcatgaaattactgtatgtgctccgcttcagtgg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gatgggcttatccggtaaggatctctgcatgaaattactgtatgtgctccgcttcagtgg 217

                        
Query: 544 ctctgctgcaatg 556
           |||||||||||||
Sbjct: 216 ctctgctgcaatg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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