CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTATCCCCAGTTAGATCTGAAACTTTTGACCCTGCCTGAG
CGTTCTGTGTAGCTAGAATTACAGTCCTGTGCCACAAGGCCCAGATATCC
CTGTGAGGAGAGAGACAGAGACAGAGAGAGGCAGAGAGACAGAGAGACAG
AGGGAGATGGCTTCCAGGGGAATTTGACCTTGCAGTGGTACCCACTAGAC
TCAAAGGAGCTGGGTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTGGTTTT
TTGANACNGGNTTTCTCTGTTTTTTTTTGGNTGTNCTANANNTCNCTCTG
TTGATCATGTTGTTCTCGCCCTCAGAAATCCACCTGCCTCTGCCTCTCGA
GTGCTGTTATTATAGGCCACCCCCACCTCGCCTGGTTTATATATCTGTTT
TTATTGTCTTCTTTGCCCTATGTCGTTGATTCTTGAATGCCTCTTTCTTT
TCTCTCTTTTTCTTTTCTTTTCTCTTTCTTACATTTTCTTTGTTTTTCTC
CGATTTTCCTTTTCTTCTTCCATACGTCCTTTCTTTTTTTTGCTTCTTTA
CTTTTTTACATTTTTCCTTTTCCTTTAAATCTATATCACCCTCTTCCTTC
CCTCCCCTCTGCTTTCTTTCTTCTACACTATTCATACCCCCCTCCTCGTT
TTTTTTTCTATCCTTCTCCATTTTCTCTTTTTTCTTTCTCTATTACTTCT
TTTTAACTCCCGTTACCG

AATGCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCAGGTCAGAGCTCTAGCCCGGGA
CAACCCAAGCTCAGTCCTCAGAACCCACATAAAAAGCTGAGTGGCCAGCT
GGTGATGGCACACTTCTTTAATCCCAGCACTCAGGAGGCAGAGGCGGGCA
GATCTCTGTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGCGTTCCAGGAC
AACCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACAAAAACAAAAACA
AATAAACAAGAAAAATCCAAATGTAGTTGCAAGTGTCTATAAATTTCAGA
ATTCCAGAGGCAAGACTGGAGGTAGAGACAGAATTTCCCAGAAACCTCCA
GGCCAGCTGTCCGGAATGCAGATCACAGTAGCAGAAATGGAAGAGACCCT
AGCTTAACCTTTATCCTGTACTGTGTAGTGCACCTGCACTCTCCCACACA
TAAGTAAATACATTTTTTTCATGGCTTACATATAATTTATTTGAGATAGG
TTCTAATGTGTATTCATGGCTAGCCTAACTCCCTGATAGCCCCTTGCCTT
TGCCTCCCAAGTGCTGGGATTAAAGTTGTGTGCTGGCCCCTCTGGGTCAC
AATAATAATTTTTTTTATATAACAAATAGGGCCATGGAAATGGTCAACCC
ACAAAGAATGAGTCCTGTAGAACCAATCCACTGACCTCTTCTTTCTGGTA
CC

Query= MSMg01no376_e09.g1 MSMg01no376_e09.g1 CHROMAT_FILE:
MSMg01no376_e09.g1 PHD_FILE: MSMg01no376_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:08 2005
         (427 letters)



>mm_chr4_125893912_125894738
          Length = 827

 Score =  741 bits (383), Expect = 0.0
 Identities = 401/407 (98%), Gaps = 1/407 (0%)
 Strand = Plus / Minus

                                                                       
Query: 22  gggacaacccaagctcagtcctcagaacccacataaaaagctgagtggccagctggtgat 81
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gggacaacccaagttcagtcctcagaacccacataaaaagctgagtggccagctggtgat 764

                                                                       
Query: 82  ggcacacttctttaatcccagcactcaggaggcagaggcgggcagatctctgtgagttca 141
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 763 ggcacacttctttaatcccagcactcaggaggcagaggcaggcagatctctgtgagttca 704

                                                                       
Query: 142 aggccagcctggtctacagagtgcgttccaggacaaccagggctacacagagaaaccctg 201
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 703 aggccagcctggtctacagagtgagttccaggacaaccagggctacacagagaaaccctg 644

                                                                       
Query: 202 tctc-aaaaaacaaaaacaaaaacaaataaacaagaaaaatccaaatgtagttgcaagtg 260
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tctcaaaaaaacaaaaacaaaaacaaataaacaagaaaaatccaaatgtagttgcaagtg 584

                                                                       
Query: 261 tctataaatttcagaattccagaggcaagactggaggtagagacagaatttcccagaaac 320
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tctataaatttcagaactccagaggcaagactggaggtagagacagaatttcccagaaac 524

                                                                       
Query: 321 ctccaggccagctgtccggaatgcagatcacagtagcagaaatggaagagaccctagctt 380
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ctccaggccagctgtccagaatgcagatcacagtagcagaaatggaagagaccctagctt 464

                                                          
Query: 381 aacctttatcctgtactgtgtagtgcacctgcactctcccacacata 427
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aacctttatcctgtactgtgtagtgcacctgcactctcccacacata 417



 Score =  101 bits (52), Expect = 1e-25
 Identities = 77/86 (89%), Gaps = 3/86 (3%)
 Strand = Plus / Plus

                                                                       
Query: 144 gccagcctggtctacagagtgcgttccaggacaaccagggctacacagagaaaccctgtc 203
           ||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 1   gccagcctgttttacagagtgagttccaggacacccagggctacacagagaaaccctgtc 60

                                     
Query: 204 tcaaaaaacaa-aa--acaaaaacaa 226
           || |||||||| ||  |||| |||||
Sbjct: 61  tcgaaaaacaacaataacaacaacaa 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)