Query= MSMg01no376_f04.b1 MSMg01no376_f04.b1 CHROMAT_FILE:
MSMg01no376_f04.b1 PHD_FILE: MSMg01no376_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:11 2005
(610 letters)
>mm_chr4_110065518_110066527
Length = 1010
Score = 1110 bits (574), Expect = 0.0
Identities = 594/601 (98%), Gaps = 2/601 (0%)
Strand = Plus / Plus
Query: 11 gaattccacaaataatctttagagctttaaaatagggtagttaaaaaaa-tctatactga 69
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 211 gaattccacaaataatctttagagctttaaaatagggtagttaaaaaaaatctatactga 270
Query: 70 gaagctaatttaaggcatttctacatagccaagccaatgtaactaaagcagatataaatg 129
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 271 gaagctaatttaaggcatttctacatagccaaaccaatgtaactaaagcagatataaatg 330
Query: 130 acaaattgaatttagaagtgattttctttcttattcccattttacttttttacctggctg 189
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 331 acaaattggatttagaagtgattttctttcttattcccattttacttttt-acctggctg 389
Query: 190 atcacacttgttatggtttgaatatggaattcttcaaaggctaatgtgctgaaaactcaa 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atcacacttgttatggtttgaatatggaattcttcaaaggctaatgtgctgaaaactcaa 449
Query: 250 tgtccagatggtgatacattttgggagatcttaaaaaatttaagaagtagagtcaagctg 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgtccagatggtgatacattttgggagatcttaaaaaatttaagaagtagagtcaagctg 509
Query: 310 gagaaagtaggtcactgagggtgtagctctcaaggttatacctgtaaccacatacaaggg 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gagaaagtaggtcactgagggtgtagctctcaaggttatacctgtaaccacatacaaggg 569
Query: 370 agaaaagatagctccttcagcatatggtcctgggaaagctgaatatctaaatatagaaga 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agaaaagatagctccttcagcatatggtcctgggaaagctgaatatctaaatatagaaga 629
Query: 430 aggaaactagaactgtatctcttaccttgtacagatatcaactcaaaatagattaaaacc 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aggaaactagaactgtatctcttaccttgtacagatatcaactcaaaatagattaaaacc 689
Query: 490 accaatataataccaaaacacttacaggtacagtcatgcagaatgtatttctgaagaaca 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 accaatataataccaaaacacttacaggtacagtcatgcagaatgtatttctgaagaaca 749
Query: 550 ctctcatagcttaagaaacaaaacaaaaaactgacaaatgaattttgtnaaattaaaaag 609
||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 750 ctctcatagcttaggaaacaaaacaaaaaactgacaaatgtattttgtaaaattaaaaag 809
Query: 610 a 610
|
Sbjct: 810 a 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_f04.g1 MSMg01no376_f04.g1 CHROMAT_FILE:
MSMg01no376_f04.g1 PHD_FILE: MSMg01no376_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:12 2005
(565 letters)
>mm_chr4_110243978_110244942
Length = 965
Score = 748 bits (387), Expect = 0.0
Identities = 393/395 (99%)
Strand = Plus / Minus
Query: 171 gaggaacactcctccattgttggtgggattgcaagcttgtacaaccactctggaaatcag 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 gaggaacactcctccattgttggtgggattgcaagcttgtacaaccactctggaaatcag 906
Query: 231 tctcacggttcctcagaaaattgaacatagtactactggaggatccctcagtaactctcc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 tctcacggttcctcagaaaattgaacatagtactactggaggatccctcagtaactctcc 846
Query: 291 tgggaatatatccagaagatgttccaaccggtaagaaggatacatgctccactatgttga 350
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tgggcatatatccagaagatgttccaaccggtaagaaggatacatgctccactatgttga 786
Query: 351 agaaattttatgttcataattttgtatatttcataacttcaaataaatatcacttcacat 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 agaaattttatgttcataattttgtatatttcataacttcaaataaatatcacttcacat 726
Query: 411 gaaacctaaaatggttgattgtttcagccacagatttccttggcattgagatacagagac 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaaacctaaaatggttgattgtttcagccacagatttccttggcattgagatacagagac 666
Query: 471 atgtggtaatataacttctaaagtgcacgcctgcttccatttctacagaaattgatgctc 530
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 665 atgtggtaatataacttctaaagtgcacgcctgtttccatttctacagaaattgatgctc 606
Query: 531 taagtaaactaacaaagtgatttccttgaaataca 565
|||||||||||||||||||||||||||||||||||
Sbjct: 605 taagtaaactaacaaagtgatttccttgaaataca 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
