BAC Information

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BAC

Clone NameMSMg01-376J22
Chromosome4 (Build37)
Map Location 29,172,963 - 29,173,410
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040735, LOC230044, LOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376J22.T7 (MSMg01no376_j22.b1)MSMg01-376J22.TJ (MSMg01no376_j22.g1)
ACCAG481894AG481895
length737753
length of high quality
(start - end)
461 (46 - 506)448 (73 - 520)
definitionCHROMAT_FILE: MSMg01no376_j22.b1 PHD_FILE: MSMg01no376_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:33 2005CHROMAT_FILE: MSMg01no376_j22.g1 PHD_FILE: MSMg01no376_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAAGTTCATATGGAAAACCAATAAACCAAGAATAGATAAAACAA
TCCTGAACAATAAAAGAAATCCTAGAGGCATAATTATTCCAGATGTCAAG
CTGCAATAGTAATAAAATCTGCATGCTATTGGTGTAGAAAAGGATCAACA
GAATTGAATTAAAGACCCAGAATTAAACCCACACACCTATGGACGCTTGA
TTTGTGATAAAGAATCCAACACCATGGAAAATAGAGCAAATCTTCAACAA
ATGGTGCTAGTCTAACTGGATGTCTTCTTGTCAAAGAATGAACATATACC
CATATTTATCACCCTGCACAAAACTCAAGTCCAAATGGATCAAAGACTTC
AAGTTAAAACCAGACACACTTAATCTAGTAGAACAGAAAGTGGGAAATAG
CATTGAACTCATTGCTACAGAAGAAAACTTCCTGAACAAAATAACAGTGG
CTCAGTCACTAAGATCAAGGATTAGTAAATGGAACCCCATAAACCTGTAA
AACTTCTGAAGGCAAAGGATATTGTCCATANGACAAAATGACAGTCTACT
CTACAGATTGGGACAGATCTTCACTACCCCTAATCCTACCTAGGGCTAAT
ATCCAAATGTCTTAAGGACTCCGAAACTAAATGCCCAAAACCCAAATATC
CTATTAAAAAAAGGGGGCTGGGCTATAAGAAAATCCT
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGGAATGATGATACACGTGGAACATA
TGGAAAAGGTGTGTTGGAAAAAGATCATGTGGCTGAGAGCGTAGAACAAG
AAAGTGGGCTTGTGAGTTTGATGATATGCTAGTGCTTACACGACAGGCAA
TATGAAGGATATTTTGATATGACGGAGAGCTTCTCCGTTCACATAACATG
AAAATTGTTAGAGCTAAGAACAAAAAAATTACATAAGCTGGTTCTGCCCC
TCACTGGCTGCAGCACTTAGGAGAGAGAGCTTTGCACCTCACCTGGGCAG
CACAGCAGAGATGACCCTGGTGCTGGGGGAGCAGGTGAGAAGGCGCTGCC
CACAGGTAATTAGTGTGGAAGAGCTGGTGCAGCAACTTGTCTGCCTTGCA
GTGAAGTGGGTGAGGAAGGATGCCCTCTTGCTACTGGCCACCCATGGCAG
ATAGGAGAGCTGGCTTGGAGGTCATGAGAGTGGGAGAGCTATCCTTGCTC
CTCATAGNCTACAGGGTTCAGGAGAGCAGGCCTTGCCCCTTGGCTGAACA
AACCATACACTTGCAGGGTGGTGCTCTCCAGACCCCTACCGAGTGTTGAA
AAAACATAAATGGCTTTTTTCCTTCTCCTCCTACCAATTTATCATCTAAC
TACGTCCATTCGTTTAGATTCTCCTCCCTCTATTTCCTCGCCCCCCTTCC
TAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_j22.g1 MSMg01no376_j22.g1 CHROMAT_FILE:
MSMg01no376_j22.g1 PHD_FILE: MSMg01no376_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:33 2005
         (448 letters)



>mm_chr4_29172763_29173610
          Length = 848

 Score =  851 bits (440), Expect = 0.0
 Identities = 446/448 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggaatgatgatacacgtggaacatatggaaaaggtgtgttggaaaaagatcatgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggaatgatgatacacgtggaacatatggaaaaggtgtgttggaaaaagatcatgtgg 260

                                                                       
Query: 61  ctgagagcgtagaacaagaaagtgggcttgtgagtttgatgatatgctagtgcttacacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagagcgtagaacaagaaagtgggcttgtgagtttgatgatatgctagtgcttacacg 320

                                                                       
Query: 121 acaggcaatatgaaggatattttgatatgacggagagcttctccgttcacataacatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaggcaatatgaaggatattttgatatgacggagagcttctccgttcacataacatgaa 380

                                                                       
Query: 181 aattgttagagctaagaacaaaaaaattacataagctggttctgcccctcactggctgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattgttagagctaagaacaaaaaaattacataagctggttctgcccctcactggctgca 440

                                                                       
Query: 241 gcacttaggagagagagctttgcacctcacctgggcagcacagcagagatgaccctggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gcacttaggagagagagctttgcacctcacctgggcagcacagcagatatgaccctggtg 500

                                                                       
Query: 301 ctgggggagcaggtgagaaggcgctgcccacaggtaattagtgtggaagagctggtgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgggggagcaggtgagaaggcgctgcccacaggtaattagtgtggaagagctggtgcag 560

                                                                       
Query: 361 caacttgtctgccttgcagtgaagtgggtgaggaaggatgccctcttgctactggccacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caacttgtctgccttgcagtgaagtgggtgaggaaggatgccctcttgctactggccacc 620

                                       
Query: 421 catggcagataggagagctggcttggag 448
           |||||||||| |||||||||||||||||
Sbjct: 621 catggcagatgggagagctggcttggag 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)