BAC Information

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BAC

Clone NameMSMg01-376K09
Chromosome4 (Build37)
Map Location 94,739,317 - 94,739,561
singlet/doubletsinglet
Overlap genenone
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
Downstream geneLOC100042411, 2310009E04Rik, Hook1, Cyp2j13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376K09.T7 (MSMg01no376_k09.b1)MSMg01-376K09.TJ (MSMg01no376_k09.g1)
ACCAG481916AG481917
length763753
length of high quality
(start - end)
479 (48 - 526)247 (73 - 319)
definitionCHROMAT_FILE: MSMg01no376_k09.b1 PHD_FILE: MSMg01no376_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:35 2005CHROMAT_FILE: MSMg01no376_k09.g1 PHD_FILE: MSMg01no376_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGGAGTTTACAGATGACAAAAAGAAACAACTCAATAAAATTA
AGGAGGAAACAGTTAAGGAGAATAAATGTCTCAGTAATGACAAAGAAAAT
ACAAACAAGGCTGATGGAAATGACGAAGACAATTCAGGATATGAGGAGAA
AATTCAAGGAAAAGAAACTCTGACAACATCTGAAAACCCAAACAACTGAA
AACTCAAATTGAAGCGTCACAAGTATAATGAATTAAACAAAAGACAGAAT
GTCAGGACTTATAGTTTAAGTAGAGGAACTAGATCAAATAATCAAGGAAT
ATGAAAACATTAAAACAAAAAAAGGAGCACAAATAAAATGTGGCACACCA
TGAGAAAAGAATTAGACCTTTGAATTATAGGCATAGATAAGGGAGAAGAA
TCCTAAGACGATGGCTTAGATCACATGTTCAACAAGATCATAGAAGAAAA
CTATCTCAAAATAAGGAACAACACACCAACAAATACAAGAAACACACAGA
ACGTCNGGTAGACAAGACCAGAAAAGAAAATACTCCCAGCATATCATAGT
TAAAACACTAAGTATATATAACAAAGACTGTATAGTTTTAAATTTCCAGA
GAAAAAATGCCAGTCCCCTTTTAAAGAAGACCTATCCGAAAAATTTATGA
TTTCCTTCCTTTGAAGCCGAAAAAGGCCGAACATGGCCTAACACCTTTCC
AAGAATAATGAAC
ATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGGGCTCATGAGAGAAACAGAAAAATA
GGACTGCCAGTGGTCCATAGAGGGGTGGGGCTGAGTCCCTAAACCTTGGG
AGATGAACCTTGGGAGAGGAGTCATGAGAGTGGGTTTGAGGGGAGGGGTC
AGAGAGCTTCTTGGAGGAGGTATTTTGTCTCCCTTGAGGCTTCAAGACAG
AAGGCAGAAGAATACTGGGAAGGATGAAGGCATAGTGGGTAGTGAGCCAG
CCTGGAGACGTAGAGACTTATTGTTGACCAGGGAAAAGCAGATGCTGTAT
TACCATCCAGGTCTCACTGGGGAGCCACAGAAAGACCTACGAAGGGAAGT
GTTGTCCCTGGACCTGCACATTAAAATAAAAAGTAGAGAAAACCTGTCGA
GGAACATGATTTTTCTAGAGGTTTGAAAATTATATTTGTGATTTCTTTCC
TTTTTTTCCAGAAGTTTAACCTATGTACAGAGGAGAGCTCAAGCCACAGG
AATGCCTTCAGAAAATTCCCTCAGGACATGCCCACAGGCCCAGCTGATGA
AGGCTATTTCTCAGGGGAACATTTGCAATGAAACGCCCCTGTGGGCGAAG
ACCGCCCTGTTTTCTTTTTGTTTCGGCACCCGAAGAGTGCCCCACACAGG
GGACCCCGTCCTATTCGCTAAATATTCGCGTGTTCAACCCTGGCCCATAA
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_k09.g1 MSMg01no376_k09.g1 CHROMAT_FILE:
MSMg01no376_k09.g1 PHD_FILE: MSMg01no376_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:35 2005
         (247 letters)



>mm_chr4_94739117_94739763
          Length = 647

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggctcatgagagaaacagaaaaataggactgccagtggtccatagaggggtggggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgggctcatgagagaaacagaaaaataggactgccagtggtccatagaggggtggggct 260

                                                                       
Query: 61  gagtccctaaaccttgggagatgaaccttgggagaggagtcatgagagtgggtttgaggg 120
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 261 gagtccctaaaccttgggagatgaaccttggtagaggagtcatgagagcgggtttgaggg 320

                                                                       
Query: 121 gaggggtcagagagcttcttggaggaggtattttgtctcccttgaggcttcaagacagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggggtcagagagcttcttggaggaggtattttgtctcccttgaggcttcaagacagaa 380

                                                                       
Query: 181 ggcagaagaatactgggaaggatgaaggcatagtgggtagtgagccagcctggagacgta 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ggcagaagaatactgggaaggatgaaggcatagcgggtagtgagccagcctggagacgta 440

                
Query: 241 gagac 245
           |||||
Sbjct: 441 gagac 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)