BAC Information

Click to search

BAC

Clone NameMSMg01-376K14
Chromosome4 (Build37)
Map Location 142,720,395 - 142,880,254
singlet/doubletdoublet
Overlap genePrdm2, LOC666018, EG626575, LOC433776, Pdpn
Upstream geneEG665983, LOC546484, 6330411D24Rik
Downstream geneLrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376K14.T7 (MSMg01no376_k14.b1)MSMg01-376K14.TJ (MSMg01no376_k14.g1)
ACCAG481926AG481927
length745729
length of high quality
(start - end)		466 (48 - 513)483 (73 - 555)
definitionCHROMAT_FILE: MSMg01no376_k14.b1 PHD_FILE: MSMg01no376_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:36 2005CHROMAT_FILE: MSMg01no376_k14.g1 PHD_FILE: MSMg01no376_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,720,395 - 142,720,857)(142,879,772 - 142,880,254)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCTAGAGCTGAGGCCAGTAGCAGGTAAGGAGCACTGGCGGCTG
AAAGCAGTGCTGTTCCTCACTACAGCCAACTCAACTGTGTCGCCCAAGCA
CCTGTGTGGCTAAATATGACCAGATCGACAGCAACTAACACTCAGAACGT
TTCGAAGTGCCTTCCAAAAGAGCTCAATCCTTCAGCACTACAGGGAACTG
TTGTGCCCAATGTCTAGAACTTTCTTTTGCTATGCTTCAAGGCACACAGC
ACCAAGAACTTTACCTGAGTGACACTGGAACCTTGGTATGCTTAGGTCTT
CTCTCCAAAACAAGTCACTCCACAGCTGTCCCTAACTCTGTTTGCTTCCA
ATACCCAGAATTACAGTCATGACAACCCAGAATCAAGACAGGCTGCATAG
GTGTCCAAATATTTGCAGAGTAACCTTCTGATGATGGCCACTAACCTGTG
GACATTATTTGGGAATAAGAAGGAATTCCAAATGTATATCAACTCAGCTT
GAGAAGTCNATATAACAGGCTATCCTAGGGGCACATCACTGTCCCTGAGA
AACATGTGTATATGGGGAGAAAATGGAATAAGCCGTAAGGGCCCCCCACA
CCTAACTTGAAAAACTAACCTTTTAGAAAAGACTTGAGCCCCCGGGCCGG
GCTGGTCCTCTTCCCATAAAAAACCCATGGTAGTCCCCCTTGGTG

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGGACTTATGAGATGTTCCTTTATCAG
GACTGCTGGCGTGTGGCTCAGAAATAGGCCATTTGCCTGGCAAGGGAGGC
CTCGTGTAGAAACATCTGGTTGGACTATAGTCACCATCTGTCGGGATGAA
GAGCACCAATTTGGTATTATCCAAACCTTTGGGTAAGAAAGGCAATAAAG
AAAGTGTGGGGTGGGTGAGATGGCCGAGCAATTGAGAGCACTTCCTGCTT
TTGCAGAGGACAGGGTTCCCACCTGAACTTCTCTGGTTCTGGATCTGATG
CCTGACAGCCCCAGGCCCGGGTTACACATAGCCTACATTGAGTGTAGGCA
AGCACTCATGTACTCGAAATAAGAATAAATCTCCTTTAAAAGAGGGCAGA
TGCCATGGTCAGGTTTTCACCACGGTGTCCAGATAGGAGAGGAAGGGTTT
ATTCTGGCTCTTGGTTTGAGAGTGTCCATCACAGGACAGGAGTGCTGTGA
GGTAGCCGACTGCATGGACCGTCGGGGAGGAGAGAGAGAAAGAGAGAGAT
GAAGATAGAGTCGGTATGCCAGTCAGATATCTCATCATTCCTTCTCCTCC
CTTTTCCCTTTCTTTTTTTCGTTTTTCTCTCTTTTCTCCCACACCGCTTT
CTCATTCCTTCCTTTCCCCCTTCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_k14.b1 MSMg01no376_k14.b1 CHROMAT_FILE:
MSMg01no376_k14.b1 PHD_FILE: MSMg01no376_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:36 2005
         (466 letters)



>mm_chr4_142720192_142721057
          Length = 866

 Score =  872 bits (451), Expect = 0.0
 Identities = 460/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctagagctgaggccagtagcaggtaaggagcactggcggctgaaagcagtgc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctagagcagaggccagtagcaggtaaggagcactggcggctgaaagcagtgc 263

                                                                       
Query: 64  tgttcctcactacagccaactcaactgtgtcgcccaagcacctgtgtggctaaatatgac 123
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 264 tgttcctcactacagccaactcaaccatgtcgcccaagcacctgtgtggctaaatatgac 323

                                                                       
Query: 124 cagatcgacagcaactaacactcagaacgtttcgaagtgccttccaaaagagctcaatcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagatcgacagcaactaacactcagaacgtttcgaagtgccttccaaaagagctcaatcc 383

                                                                       
Query: 184 ttcagcactacagggaactgttgtgcccaatgtctagaactttcttttgctatgcttcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcagcactacagggaactgttgtgcccaatgtctagaactttcttttgctatgcttcaa 443

                                                                       
Query: 244 ggcacacagcaccaagaactttacctgagtgacactggaaccttggtatgcttaggtctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcacacagcaccaagaactttacctgagtgacactggaaccttggtatgcttaggtctt 503

                                                                       
Query: 304 ctctccaaaacaagtcactccacagctgtccctaactctgtttgcttccaatacccagaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctctccaaaacaagtcactccacagctgtccctaactctgtttgcttccaatacccagaa 563

                                                                       
Query: 364 ttacagtcatgacaacccagaatcaagacaggctgcataggtgtccaaatatttgcagag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttacagtcatgacaacccagaatcaagacaggctgcataggtgtccaaatatttgcagag 623

                                                      
Query: 424 taaccttctgatgatggccactaacctgtggacattatttggg 466
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taaccttctgatgatggccactaacctgtggacattatttggg 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no376_k14.g1 MSMg01no376_k14.g1 CHROMAT_FILE:
MSMg01no376_k14.g1 PHD_FILE: MSMg01no376_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:36 2005
         (483 letters)



>mm_chr4_142879395_142880277
          Length = 883

 Score =  880 bits (455), Expect = 0.0
 Identities = 476/483 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggacttatgagatgttcctttatcaggactgctggcgtgtggctcagaaataggccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 860 ctggacttatgagatgttcctttatcaggactgctggcgtgtggctcagaagtaggccat 801

                                                                       
Query: 61  ttgcctggcaagggaggcctcgtgtagaaacatctggttggactatagtcaccatctgtc 120
           ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttgtctggcaagggagccctcgtgtagaaacatctggttggactatagtcaccatctgtc 741

                                                                       
Query: 121 gggatgaagagcaccaatttggtattatccaaacctttgggtaagaaaggcaataaagaa 180
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 740 aggatgaagagcaccaatttggtattatccaaacctttgggtgagaaaggcaataaagaa 681

                                                                       
Query: 181 agtgtggggtgggtgagatggccgagcaattgagagcacttcctgcttttgcagaggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agtgtggggtgggtgagatggccgagcaattgagagcacttcctgcttttgcagaggaca 621

                                                                       
Query: 241 gggttcccacctgaacttctctggttctggatctgatgcctgacagccccaggcccgggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gggttcccacctgaacttctctggttctggatctgatgcctgacagccccaggcccgggt 561

                                                                       
Query: 301 tacacatagcctacattgagtgtaggcaagcactcatgtactcgaaataagaataaatct 360
           ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 560 tacacatagccaacattgagtgtaggcaagcactcatgtactcgacataagaataaatct 501

                                                                       
Query: 361 cctttaaaagagggcagatgccatggtcaggttttcaccacggtgtccagataggagagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctttaaaagagggcagatgccatggtcaggttttcaccacggtgtccagataggagagg 441

                                                                       
Query: 421 aagggtttattctggctcttggtttgagagtgtccatcacaggacaggagtgctgtgagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagggtttattctggctcttggtttgagagtgtccatcacaggacaggagtgctgtgagg 381

              
Query: 481 tag 483
           |||
Sbjct: 380 tag 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |