BAC Information

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BAC

Clone NameMSMg01-376K19
Chromosome4 (Build37)
Map Location 68,354,736 - 68,355,128
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433715, Tcp1-ps1
Downstream geneDbc1, LOC622491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376K19.T7 (MSMg01no376_k19.b1)MSMg01-376K19.TJ (MSMg01no376_k19.g1)
ACCAG481936AG481937
length761772
length of high quality
(start - end)		476 (47 - 522)401 (73 - 473)
definitionCHROMAT_FILE: MSMg01no376_k19.b1 PHD_FILE: MSMg01no376_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:37 2005CHROMAT_FILE: MSMg01no376_k19.g1 PHD_FILE: MSMg01no376_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTAGCTCTGTACCCCATTTTTTAATAGGGTTATTTGATT
TTCTGGAGTCCATCTTCTTGAGTTCTTTATATATTTTGGATATTAGTCCC
TTATCTGCTTAAGAATTGGTAAAGATCCTTTCCCAATCTGTTGGTGACCT
TTTTGTCTTACTGACAGTTTCTTTTGCCTTACAGAAGCTTTGCAATCTTA
TGAGGTCCCATTTGTCAATTCTCAATCTTACAGGACAAACCATTGCTTTT
TCTGTTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCTCCA
CTTTCTCCTCTATGAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTG
ATCCACTTAGACTTGACATTAGTACAAGGATCCATCCCATATACAACCAC
TGGACCCAGACACTATTGCATACACCAGAAAGATTTTGCTGACAGGACCC
TGACATAGCTCTCTCTTGTGAGTCTTTGCCAATGCCTGGCAAATACAGAA
GTGGATGCTCACAGTTATCTATTGGATGGGACACAGGGGCCCCTTATGAA
GGAGCTAGAGAAAGTACCCCAGAAGCTAAGGAGTCTGCCGCCCTATAGGT
GGAACACCCTATGAACTAACCAGTAACCCCCCCCCGGCCCGTCCCCGAAA
GTGGGGTCCTAATTGAATTGGAGAAAAAGAAGGCCTATCTGCCTCCTTGT
GAGGAAGGCCG

CGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATCCCATAGAGATGAGTTCTTTATGTTT
ATGAGAGGGAGCACAGGAGTGATTGATTGATAATGTTCTTAAAAGGACTG
TACTGATACTATTTGAAGTCTGCAAATAAGACAGCTGTGAGAAAAGAGGC
CAGATCAGATTTGAAGTATACATATTTGTGTTTGGATGATGGGGTATATT
TGGTAGCATCCCATTATCCACTGAGGATACATTCTGAGATTCCTTATGGA
TACTCCAAATCACAATACACAGCACTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTTTG
TGTGTCTGTGAGTGTGTGCACGCGTACATACGTAATAAATGTGATGGTAG
AAAGAGACATTGCAGAGTGTGTCTACAGTGTTATTTGTAAAAAAGTTTGG
ACATACACTATTAAATAACATAGGAGTGACCCCCTTATAATGTGAACAGA
CCCATTTCGTAATTTGCTGGGGCCTAAACCGAGGGACTTTTTTATGAAAA
TCCCGCGCCAAGGTATTAACCCCGCTCCTTCTTCTGGAGGGTCTAGGAGG
TTCCCATCCTCCCCCTGGGGGAGAAAATTTGGCGCTTCTCCACGGGTCTC
TGATCGCCAATTTTCTCAAAATTTCCCTGCCTTTTCTATGTAAATGGGAA
AATCTATCCCCTTCCACTTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_k19.g1 MSMg01no376_k19.g1 CHROMAT_FILE:
MSMg01no376_k19.g1 PHD_FILE: MSMg01no376_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:37 2005
         (401 letters)



>mm_chr4_68354677_68355477
          Length = 801

 Score =  716 bits (370), Expect = 0.0
 Identities = 390/402 (97%), Gaps = 10/402 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcccatagagatgagttctttatgtttatgagagggagcacaggagtgattgattgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 atcccatagagatgagttctttatgtttatgagagggagcacaggagtgattgattgata 393

                                                                       
Query: 61  atgttcttaaaaggactgtactgatactatttgaagtctgcaaataagacagctgtgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atgttcttaaaaggactgtactgatactatttgaagtctgcaaataagacagctgtgaga 333

                                                                       
Query: 121 aaagaggccagatcagatttgaagtatacatatttgtgtttggatgatggggtatatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaagaggccagatcagatttgaagtatacatatttgtgtttggatgatggggtatatttg 273

                                                                       
Query: 181 gtagcatcccattatccactgaggatacattctgagattccttatggatactccaaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gtagcatcccattatccactgaggatacattctgagattccttatggatactccaaatca 213

                                                                       
Query: 241 caatacacagc-actctctctctctctctctctctctctctctctctctctctctctctc 299
           ||||||||||| | |         ||||||||||||||||||||||||||||||||||||
Sbjct: 212 caatacacagcaaat---------tctctctctctctctctctctctctctctctctctc 162

                                                                       
Query: 300 tctctctctctctctctctctcccctttgtgtgtctgtgagtgtgtgcacgcgtacatac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tctctctctctctctctctctcccctttgtgtgtctgtgagtgtgtgcacgcgtacatac 102

                                                     
Query: 360 gtaataaatgtgatggtagaaagagacattgcagagtgtgtc 401
           ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 101 gtaataaatatgatggtagaaagagacattgcagagtgtgtc 60


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 109
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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