Query= MSMg01no376_n01.b1 MSMg01no376_n01.b1 CHROMAT_FILE:
MSMg01no376_n01.b1 PHD_FILE: MSMg01no376_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:48 2005
(492 letters)
>mm_chr4_31357750_31358641
Length = 892
Score = 866 bits (448), Expect = 0.0
Identities = 481/496 (96%), Gaps = 8/496 (1%)
Strand = Plus / Plus
Query: 5 gaattcactattattttagaggtgctttacgccatctgtctgtgctattaacacataagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactattattttagaggtgctttacgccatctgtctgtgctattaacacataagt 264
Query: 65 agataatgattctccatgttttcatgcatgcctcaaagactattaacagtttcctagtga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agataatgattctccatgttttcatgcatgcctcaaagactattaacagtttcctagtga 324
Query: 125 aacaattaagttgcaatttacttttgataatctggtgtcctcaaaatgaagttaattagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacaattaagttgcaatttacttttgataatctggtgtcctcaaaatgaagttaattagc 384
Query: 185 cagacatggtatcacatgcctttactccgtgccacttaggagacagaagcaggtagatct 244
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 cagacatggtatcacatgcctttactccgtggcacttaggagacagaagcaggtagatct 444
Query: 245 ctaaaggttccaggccagcttggtctacctagcaagtttcaggccagtcggaggtacata 304
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 ctaaaagttccaggccagcttggtctacctagcaagtttcaggccagtcagaggtacata 504
Query: 305 ctgagaccttctcaaaataaacaaacaaacaaacaaacaaataaataaa----acaatac 360
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 505 ctgagaccttctcaaaataaacaaacaaacaaacaaataaataaataaataaaacaataa 564
Query: 361 aaaacaatgtaattaagtaaattcactaatctactttgctgccacttagacatcaaatag 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 aaaacaatgtaattaagtaaattcactaatttactttgctgccacttagacatcaaatag 624
Query: 421 ctttcttttctgtttgtttgttt----tagttttggtttttgtttgggttttaggtttgt 476
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 625 ctttcttttttgtttgtttgtttgttttagttttggtttttgtttgggttttaggtttgt 684
Query: 477 tttgtcttggggtttt 492
||||||||||||||||
Sbjct: 685 tttgtcttggggtttt 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_n01.g1 MSMg01no376_n01.g1 CHROMAT_FILE:
MSMg01no376_n01.g1 PHD_FILE: MSMg01no376_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:48 2005
(569 letters)
>mm_chr4_31690646_31691614
Length = 969
Score = 1064 bits (550), Expect = 0.0
Identities = 565/570 (99%), Gaps = 2/570 (0%)
Strand = Plus / Minus
Query: 1 tgctctgattgttgtaacttaaacatgttaatgtccaattccacatgttccttctgtggc 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 769 tgctctgattgttgtaacttaaacatgtt-atgtccaattccacatgttccttctgtggc 711
Query: 61 tttctgtttaagaaccttgcagtcagtgtctgtgaagatgaagcgatggagatggccttc 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tttctgtttaagaactttgcagtcagtgtctgtgaagatgaagcgatggagatggccttc 651
Query: 121 attttcactcctgttcctcatgtagacactggggacgtgggcaacaacaataaaaatagc 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 650 attttcactcctgttcctcatgcagacactggggacgtgggcaacaacaataaaaatagc 591
Query: 181 ctataaacttaattcacgattttgtattgacccttgtttgatgaggtatgaacacgcggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctataaacttaattcacgattttgtattgacccttgtttgatgaggtatgaacacgcggt 531
Query: 241 tttctagatggagtcatgactaataacgacattaatctactctgaattccataaagttag 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tttctatatggagtcatgactaataacgacattaatctactctgaattccataaagttag 471
Query: 301 tttccgggccaaacattttatgttatgatgaagtgtattgtataatggaagatcttgagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tttccgggccaaacattttatgttatgatgaagtgtattgtataatggaagatcttgagt 411
Query: 361 acagatgccttttattaaaattggtttttatagttaaaggaccttttagtgagagagaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 acagatgccttttattaaaattggtttttatagttaaaggaccttttagtgagagagaag 351
Query: 421 ggttggcttcaggattatctatgctgtgctgactttatgg-cccccaaggccctcttcaa 479
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 350 ggttggcttcaggattatctatgctgtgctgactttatggccccccaaggccctcttcaa 291
Query: 480 atgcaaatgtgggtgttcattaagcagaaatggtttccaaactgttatgccctgccatgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atgcaaatgtgggtgttcattaagcagaaatggtttccaaactgttatgccctgccatgc 231
Query: 540 taatgcaggtggaaatttgaaagcttcctg 569
||||||||||||||||||||||||||||||
Sbjct: 230 taatgcaggtggaaatttgaaagcttcctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
