BAC Information

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BAC

Clone NameMSMg01-377F23
Chromosome4 (Build37)
Map Location 51,788,191 - 51,788,545
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040979, LOC666681, LOC100040814
Downstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377F23.T7 (MSMg01no377_f23.b1)MSMg01-377F23.TJ (MSMg01no377_f23.g1)
ACCAG482469AG482470
length834827
length of high quality
(start - end)
383 (45 - 427)362 (75 - 436)
definitionCHROMAT_FILE: MSMg01no377_f23.b1 PHD_FILE: MSMg01no377_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:31 2005CHROMAT_FILE: MSMg01no377_f23.g1 PHD_FILE: MSMg01no377_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTATCTCTGTGCTCCATTTTCAATTGGGTTATTTGGTTCTT
TGCTAATTTCTTGAATTCTTTATATATTTTGGAAATTAGCCCTCTATCAA
ATGTGGGGTTTGTGAGGAAATTTTCCCCAATATGTAGGCTGTGATTTCTC
CTATTGACTGTGTCTTTTTGCTGCCTTACAGAAGCTGTTCAACTTCATTG
AAGTCCTATTTATCAATTGCTGGTCTTAGAGCCTGAGCCATTGGATTTCT
GTGACAATGAGTTGTAGACTCTTTCCCATTTTCTCTATTAGATTCAATAT
GTCTGGTTTTATGTAGAGGTCCTTGATTCACTTGGACTTGGTCTTTGTAA
AAGGTGAAAAATATGAATCAATTTTCATTTTTCTACATACAGACTGCCAG
TTTAACCCACATCATTTATTGAAGATGCTTTCTTTTTCCCAATGTAAGTT
TTTGGCTTCTCATGCCTACAATTAATTGGTCCTCTATTATTTGGGTCTAT
TTCTTGTGTATTTATTCTCTATTCCTTTTTTCACTCTTTTTGTCTTCTCT
CCATCTTATTTCCGTTTTTTCCTTACTTCTTCTTTTCCCATTCTTTCTCT
TTTCTTTCCCTCTTCTTCTTTCCCTCCTATCTTTTTCCGTTTTTTTTCTA
TCTTTCTTTTCCTTTCGCGTCCTCTCTATTTTATCTCATTCCCTTCCAAT
CTTTATTTTTCTAATATTCTCCTCTGTTTATTTTCTCTTTTCCTATTCCT
TTATTCTCCTTTACTTTTCCCTATTTTCCTTACG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCAGCAAGAGGAGAAAGCAAGTAAA
GAATTCAAAAGCTTTCCCCTCAGAGCACCTTATGATTGGGGTCACTCAGC
AGGTGTCTTCACATTGTAAGATGCCTCTCCCTGTGTCAGTTGGTATAGTC
TAGATAATCCCTCACAAGCAGAACTGAAGAACTGTCTCATGGGTGAGTCT
AGACTCTAAAACTGACAATATTAACCTTCACGGTTGGCTTAAGAGGAAAG
ATTCAGGTCAGAACTACTTTGTTCCAAATGAATTTCAGTCCAAAGTTCTA
TGATTTCCTGGTTACACTTAATCCCTCCTTTTTATAGCCCATCTCATTGA
TCTGCACATGCACTGGCATGGCCCTGTCACTTTGCAACCTGGTACCTTTA
TTATAAATCTTAAAATCACAGAAAATTACTTTGCATTTTTTTAGCTTTAC
TTTCTTTATTCTCCCACTTGGGCATTCCTCCATTCTTTTTTTTTTTTTAA
GGGAAAAAATATACCGGTTTTTCATATTTAAGGCCAAAAACAATCCTTTT
TTTTTGGCCAATATATGGAAATTTTTTCCCCTTTCTAAAAAGGAAGAAGC
GCCTTTTACCTTCCACCGGCGACACCACAACACCCCCCTTATCTCCCCCC
TCTTTCTCTTTTACTATTTTTCCCCCTTTTCTATTTGGGGACTCTTTGAT
TGTTTCTTTCTTTCCCTTATTCTATCCCTTTTTTTCCCCTCCCCTTCTAC
TTTTTTTGTTTTTATTCTCTGTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_f23.g1 MSMg01no377_f23.g1 CHROMAT_FILE:
MSMg01no377_f23.g1 PHD_FILE: MSMg01no377_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:31 2005
         (362 letters)



>mm_chr4_51787784_51788545
          Length = 762

 Score =  663 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   agaggagaaagcaagtaaagaattcaaaagctttcccctcagagcaccttatgattgggg 67
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 762 agaggagaaagcaagtaaagaattcaaaagctttcctctcagagcaccttatgattgggg 703

                                                                       
Query: 68  tcactcagcaggtgtcttcacattgtaagatgcctctccctgtgtcagttggtatagtct 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tcactcagcaggtgtcttcacattgtaagatgcctctccctgtgtcagttggtatagtct 643

                                                                       
Query: 128 agataatccctcacaagcagaactgaagaactgtctcatgggtgagtctagactctaaaa 187
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 642 agataatccctcacaagcagaactgaagaactgtctcatgagtgagtctagactctaaaa 583

                                                                       
Query: 188 ctgacaatattaaccttcacggttggcttaagaggaaagattcaggtcagaactactttg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ctgacaatattaaccttcacggttggcttaagaggaaagattcaggtcagaactactttg 523

                                                                       
Query: 248 ttccaaatgaatttcagtccaaagttctatgatttcctggttacacttaatccctccttt 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttccaaatgaatttcagtccaaagttctatgatttcctggttacacttaatccctccttt 463

                                                                  
Query: 308 ttatagcccatctcattgatctgcacatgcactggcatggccctgtcactttgca 362
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 462 ttatagcccatctcattgatctgcacatgcactggcacggccctgtcactttgca 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)