BAC Information

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BAC

Clone NameMSMg01-377J09
Chromosome4 (Build37)
Map Location 46,971,763 - 46,972,074
singlet/doubletsinglet
Overlap geneGabbr2
Upstream geneTdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2
Downstream geneAnks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377J09.T7 (MSMg01no377_j09.b1)MSMg01-377J09.TJ (MSMg01no377_j09.g1)
ACCAG482632AG482633
length808825
length of high quality
(start - end)
311 (55 - 365)---
definitionCHROMAT_FILE: MSMg01no377_j09.b1 PHD_FILE: MSMg01no377_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:49 2005CHROMAT_FILE: MSMg01no377_j09.g1 PHD_FILE: MSMg01no377_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCTCTTAATCCGCGCGCGCTATACGACTCACTATTCCGAGAGGATCCG
CGGAATTCCCCATTAAGCTCACAGAGCAGCTAGCTAGGAGTTCACAGGGT
GGTAGAACAAGGGAGGCCTGCCTCAACATGGTGGAAGAAGAGAATCAACT
CCCTGAAGTTACACATGGACTGTGGCAACTTGCACCTGTACACACACACA
CACACACACACACACACACACACACACACACACACGAACAAATAAAAACA
TACTTAGAGAGAGAGAGGGAGACAGAGAGGAGTGCTGCCATGTCTTCTAC
ACACACATGTCTGCTTTCCTAAGTAACAGAACCTGAGACACTCACGCTGT
GTGTATTTGCTATGGCTGGCCCTACTGCTATGGTGGATATTGAGGGCTCC
CTTATCATCCCCCCCTTTCTGCTTCTTGACCTGGTACCCTCCTTTCATGA
ATTTTTCTTTATGTTCTTCCCCCTGTCTTTTGACTTATCACACTTTCTTT
ACATTCCATCTATCTCTGCTCCTTCCTGTCTTTTAAATTTCCATTCACCT
TTATGCTTCCTTCTAACTCCCTCCTTTCTTTTCCCCTTACTACCTTACCT
CCTTCTTTCCCTTCTTTCTCCTTATCTTTCCTCCTTTTCTTCCACTCATC
CATTTTTCCCCATCTTAACTCCTCTTCTATTACCATTCCCCCACACCTTA
CTTTTCATCATACCTTCCTCACTATAATTCTCTCTCATCTAACCTTCCTG
TCTCTCCTCTCACAATTTCCTTCTTTCCCTTGCTCTCTTTCCCCCTTCTA
TCTCTCTN
TTTTACGATTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGTGTTCCGCCGGATTCCCCGGACAGCTAGATAGAG
GAACTATGTCTTAAATAACCCGCACGAGGATGACGGCCAGCCCCTCTGCT
TTCTCTTCCTCTCCCTCCCCCCCCCTCTCTCCTCTCTCCCTTTCTCCTTT
CCCTCCCCCCCTTCTCTCCCCTCTTCCTCCCGCCCCCCTCTTTTTTTTTC
CTCTTCCCTTTTTTCTTCCCCCTCTCTTCCCTCCCCTCCTCCCCTCCCCC
CCCTTCTCTCCCCCTTTTTTTCCCCCCTTCTTTTTCTCTTTTTCCCCCTT
TTTTCCCCCCCCTCCCTCTTTTTTTTTTTTTCCCCTCTTTCCCCCTTCTC
TTTCTTCCCTCTCTTTCTTTTTTTCCCCCTTTTTCCCCCCCCCCCCTCCC
CTCCTCCCTTCTTTCCCTTTCCCCCCCCCCCCCCTTTTTCCCCCCTTTCT
TTCCCCTTCTTCCCCCTCCTCTCCCCCCTCTTCTTCCCCCCCCCTCTTTT
CCTCTCCCCCTTCCCCCCCCCTTCTTTTTTCCCCCCCCTTTTCCTCCCCC
TCTCCCCCCCCCTTCCCTTCTCTTCTCCCCCTCCCTTCCCTTCTCCCTCC
CCCCCTCCTCCCCCCCCCCCCCTTCCCCCCCCCCCCCCCCTTTTCCCCCC
CCTTTTCTCTTTTTCCTCTCTCTTCCCCCCCCCTCCTCTCCCCCCTCTTC
CCCTTTTTCTTTTTCTCTTTTCCTCCCCTCTTTTCCCCCCCTCCTCTCCT
TTTTTTTTTTTTTCTCCCCCCCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_j09.b1 MSMg01no377_j09.b1 CHROMAT_FILE:
MSMg01no377_j09.b1 PHD_FILE: MSMg01no377_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:49 2005
         (311 letters)



>mm_chr4_46971564_46972274
          Length = 711

 Score =  555 bits (287), Expect = e-162
 Identities = 306/313 (97%), Gaps = 3/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccccattaagctcacagagcagctagctaggagttcacagggtggtagaacaaggga 60
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 attccccag-aagctcacagagcagctagctaggagttcacagggtggtagaacaaggga 258

                                                                       
Query: 61  ggcctgcctcaacatggtggaagaagagaatcaactccctgaagttacacatggactgtg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 259 ggcctgcctcaacatggtggaagaagaaaatcaactccctgaagttacacatggactgtg 318

                                                                       
Query: 121 gcaacttgcacctgtacacacacacacacacacacacacacacacacacacacacacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcaacttgcacctgtacacacacacacacacacacacacacacacacacacacacacaca 378

                                                                       
Query: 181 cg--aacaaataaaaacatacttagagagagagagggagacagagaggagtgctgccatg 238
           |   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 379 cacaaacaaataaaaacatacttagagagagagagagagacagagaggagtgctgccatg 438

                                                                       
Query: 239 tcttctacacacacatgtctgctttcctaagtaacagaacctgagacactcacgctgtgt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcttctacacacacatgtctgctttcctaagtaacagaacctgagacactcacgctgtgt 498

                        
Query: 299 gtatttgctatgg 311
           |||||||||||||
Sbjct: 499 gtatttgctatgg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)