Query= MSMg01no377_j14.b1 MSMg01no377_j14.b1 CHROMAT_FILE:
MSMg01no377_j14.b1 PHD_FILE: MSMg01no377_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:50 2005
(474 letters)
>mm_chr4_108194653_108195526
Length = 874
Score = 783 bits (405), Expect = 0.0
Identities = 408/409 (99%), Gaps = 1/409 (0%)
Strand = Plus / Minus
Query: 5 gaattcaagtacttttaaattctcacctcaatatatagggaattttcctcccatattcag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gaattcaagtacttttaaattctcacctcaatatatagggaattttcctcccatattcag 349
Query: 65 ctcaattcactagatataaaccctgttacaattgttccttctcattctccaataacactc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctcaattcactagatataaaccctgttacaattgttccttctcattctccaataacactc 289
Query: 125 tctcaaacaaataatttacaagtttaagtacacatttaaatttatgtatttattagtgga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tctcaaacaaataatttacaagtttaagtacacatttaaatttatgtatttattagtgga 229
Query: 185 ggcatgcaatatgcacatctagatagaagacaacttgtctgggttggatgtctttgttta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ggcatgcaatatgcacatctagatagaagacaacttgtctgggttggatgtctttgttta 169
Query: 245 ctatgtaggtcccagagactgaactcagattgtcatacttggtggcaagtgccttcacct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ctatgtaggtcccagagactgaactcagattgtcatacttggtggcaagtgccttcacct 109
Query: 305 gctaagccatctcactggcctttaattatatagttagacaataaatttcatgctctgaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 108 gctaagccatctcactggcctttaattatatagttagacaataaatttcatgctctg-aa 50
Query: 365 aaaaaatcattccatgtaatactgattaaatttcaatgataatgaagaa 413
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 aaaaaatcattccatgtaatactgattaaatttcaatgataatgaagaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_j14.g1 MSMg01no377_j14.g1 CHROMAT_FILE:
MSMg01no377_j14.g1 PHD_FILE: MSMg01no377_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:50 2005
(420 letters)
>mm_chr4_108024356_108025175
Length = 820
Score = 789 bits (408), Expect = 0.0
Identities = 417/420 (99%)
Strand = Plus / Plus
Query: 1 aattatatttgacatcaaaagactagagagagacagaaatagaaaaatagattttatgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattatatttgacatcaaaagactagagagagacagaaatagaaaaatagattttatgct 260
Query: 61 aaatatagagtgtatactcagcatcaagcagggttagagtgtcagaggtgaggtaagctg 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 aaatatagagtgtatactcagcatcaagcagggttagagtgtcagaggcgaggtaagctg 320
Query: 121 actgtcccttccatgagtcccagtggccatgtgtgagcatcttgcacactgcgcatgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgtcccttccatgagtcccagtggccatgtgtgagcatcttgcacactgcgcatgatt 380
Query: 181 gtagtggagctgcccttgggcaagtcagtcttttcatcagttctcacactaaaggaattg 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagtggtgctgcccttgggcaagtcagtcttttcatcagttctcacactaaaggaattg 440
Query: 241 tagcctactccatgggcaggggaggaaaaggctgtgtatgtttagtgacattgctctgtt 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagcctattccatgggcaggggaggaaaaggctgtgtatgtttagtgacattgctctgtt 500
Query: 301 ttccttcaggggtgaagaacgaagagactttacagacaggattttaagccatgtgtggtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccttcaggggtgaagaacgaagagactttacagacaggattttaagccatgtgtggtg 560
Query: 361 ctgcatatctgtaataccagcatttgggaggtaggagcagaaggatcaagagtttaaggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgcatatctgtaataccagcatttgggaggtaggagcagaaggatcaagagtttaaggt 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
