NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATATATATCAATAAAATAAATAAATAAATCTTAAAACAGTCAG
TTAAATATCAGTGATTCAGTTTCTCATATTCTAATATTAAATAGAAAGAG
TTTGAATCAGACTGCCATGTATGTAAGTTTTGATATGAACAACAGTGACC
TCCTAATATTGGGTAAGCAATCTCAAGGCATATTTTCATCTACAAAGCAG
AGAGATAATTTCATTTATCTCCCAAAGTTATTTGTAGTCAGTGTTAACAA
TGATATATTAAATTTTAGTAATTATCACTGTATGCCATACTCACCTATGA
AGGATATACAATTACAAATAATCTATATGGCAGAAAACGAAACTGGAACA
AATTAACTGCAATAGAGAAGAGACAAAATTTAAACACATTTTTTTTTATG
TAGATGTTAGCCTACACTGAACTTCACCGTTTACAAAACCACAGCAGCTT
AATACTGTTAAAATAACAGAATTTTGCCGAATTGTCTTGAAAACCAAATG
TGATTAATATAATCCCCAATATCCTCCAAAATTGTAAAATAAACCCCTTT
CCATAGTGCACATTCAGGTTACCCAGTGGCTCTGAGTAGAATTCTTTCTG
GAAAAAAATGTTTTGAAATCGGTGCACAAGTTATCTTCACCCTACTGGGT
TGGCACCTTTTTACCTACTATGAACAAATGACCATAAGGGTTCTCCTAAA
CTAAAATTTT

NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTATGCAAATGATGTGTTC
ATAGAACTTTAAAACTTTAACCACCTTGTGATTGCCATATGCAGGGATCC
ATCCCATAATCAGCTTCCAAATGCTGACACCATTGCATACACTAGCAAGA
TTTTGCTGAAAGGACCCAGATATAGCTCTCTCTTGTGAGACTATGCCGGG
GCCTAGCAAACACAGAAGTGGATGATCACATTCAGCTATTGGATGGGTCA
CACCCCAATGGAGGAGCTAGAGAAATTACCCAAGGAGCTAAAGGGAACTG
CAACCATATAGGTGGAACAACAATATGAACTAACCAGTACCCCGGAGCTC
TTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCAGCCATCACTG
CAAAGAGAGGCCCATTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGG
AACACCAGGGCCAAAAAGGAGGAGTGGGTGGGTAGGGGATTGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTNNNNNTTTTTTNTNNNTNTTTTTTTTNNTTTTTNTTTTTTTTTTT
TTNTTTTTTTNNTTTTTTTTCCTTNTTNTTTTTTTTTTTTTTTTTTTGTN
TCCC

Query= MSMg01no377_l13.b1 MSMg01no377_l13.b1 CHROMAT_FILE:
MSMg01no377_l13.b1 PHD_FILE: MSMg01no377_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:00 2005
         (513 letters)



>mm_chr4_66905725_66906631
          Length = 907

 Score =  868 bits (449), Expect = 0.0
 Identities = 495/513 (96%), Gaps = 6/513 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaataaataaataaatcttaaaacagtcagttaaatatcagtgattcagtttctcata 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 taaaataaataaataaatcttaaaacagtcagttaaataccagtgattcagtttctcata 260

                                                                       
Query: 61  ttctaatattaaatagaaagagtttgaatcagactgccatgtatgtaagttttgatatga 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ttctaatattaaatagaaagagtttgaatcagactgccatgtatataagttttgatatga 320

                                                                       
Query: 121 acaacagtgacctcctaatattgggtaagcaatctcaaggcatattttcatctacaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaacagtgacctcctaatattgggtaagcaatctcaaggcatattttcatctacaaagc 380

                                                                       
Query: 181 agagagataatttcatttatctcccaaagttatttgtagtcagtgttaacaatgatatat 240
           |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagagataattt----tatctcccaaagttatttgtagtcagtgttaacaatgatatat 436

                                                                       
Query: 241 taaattttagtaattatcactgtatgccatactcacctatgaaggatatacaattacaaa 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taagttttagtaattatcactgtatgccatactcacctatgaaggatatacaattacaaa 496

                                                                       
Query: 301 taatctatatggcagaaaacgaaactggaacaaattaactgcaatagagaagagacaaaa 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taatctatatggcagaaaacaaaactggaacaaattaactgcaatagagaagagacaaaa 556

                                                                       
Query: 361 tttaaacacatttttttttatgtagatgttagcctacactgaacttcaccgtttacaaaa 420
           |||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 557 tttaaacacattttttt--atgtagatgttagcctacactgaacttcactgtttacaaaa 614

                                                                       
Query: 421 ccacagcagcttaatactgttaaaataacagaattttgccgaattgtcttgaaaaccaaa 480
           |||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||
Sbjct: 615 ccacagcagcttcatactgttaaaataacagaatcttgccgaattgtcatgaaaagcaaa 674

                                            
Query: 481 tgtgattaatataatccccaatatcctccaaaa 513
           ||||| |||| |||||||||||| |||||||||
Sbjct: 675 tgtgactaatgtaatccccaataccctccaaaa 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 907
Length adjustment: 10
Effective length of query: 503
Effective length of database: 897
Effective search space:   451191
Effective search space used:   451191
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)