This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-377L13
Chromosome
4 (Build37)
Map Location
66,905,925 - 66,906,431
singlet/doublet
singlet
Overlap gene
none
Upstream gene
Astn2
,
LOC667499
,
Tlr4
Downstream gene
LOC100039379
,
Hmgb1-rs18
,
LOC433715
Link
Open Mouse BAC browser
Click to get alignment info.
name
Astn2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:56079
MGI:1889277
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
LOC667499
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:667499
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
Tlr4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:21898
MGI:96824
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100039379
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100039379
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Hmgb1-rs18
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:15298
MGI:104763
definition
gene_synonym
: Hmg1-rs18
note
: high mobility group box 1, related sequence 18
pseudo
: _no_value
name
LOC433715
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:433715
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 mRNAs, 910 ESTs, 7 Proteins
pseudo
: _no_value
name
Astn2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130659
GeneID:56079
MGI:1889277
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: astrotactin 2
transcript_id
: NM_019514.3
name
Astn2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118131023
GeneID:56079
MGI:1889277
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: astrotactin 2
transcript_id
: NM_207109.2
name
Tlr4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130391
GeneID:21898
MGI:96824
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: toll-like receptor 4
transcript_id
: NM_021297.2
name
Astn2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:46488928
CCDS:CCDS18268.1
GeneID:56079
MGI:1889277
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
note
: isoform a is encoded by transcript variant 1; bM423P8.1 (astrotactin 2); bM468K2.1 (astrotactin 2); bM243L4.1 (astrotactin 2); bM264P11.1 (astrotactin 2); bM383P24.1 (astrotactin 2); bM452J22.1 (novel protein)
product
: astrotactin 2 isoform a
protein_id
: NP_062387.2
name
Astn2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:46488930
CCDS:CCDS18269.1
GeneID:56079
MGI:1889277
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
note
: isoform b is encoded by transcript variant 2; bM423P8.1 (astrotactin 2); bM468K2.1 (astrotactin 2); bM243L4.1 (astrotactin 2); bM264P11.1 (astrotactin 2); bM383P24.1 (astrotactin 2); bM452J22.1 (novel protein)
product
: astrotactin 2 isoform b
protein_id
: NP_996992.1
name
Tlr4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:10946594
CCDS:CCDS18271.1
GeneID:21898
MGI:96824
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0046696 - lipopolysaccharide receptor complex [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0001530 - lipopolysaccharide binding [Evidence ISS]; GO:0004872 - receptor activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence ISS] [Evidence IEA]
GO_process
: GO:0007250 - activation of NF-kappaB-inducing kinase [Evidence NAS]; GO:0016046 - detection of fungus [Evidence ISS]; GO:0007249 - I-kappaB kinase/NF-kappaB cascade [Evidence IDA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA]; GO:0042116 - macrophage activation [Evidence ISS]; GO:0045576 - mast cell activation [Evidence NAS]; GO:0045671 - negative regulation of osteoclast differentiation [Evidence ISS]; GO:0043123 - positive regulation of I-kappaB kinase/NF-kappaB cascade [Evidence IDA]; GO:0045362 - positive regulation of interleukin-1 biosynthesis [Evidence NAS]; GO:0045084 - positive regulation of interleukin-12 biosynthesis [Evidence ISS]; GO:0045368 - positive regulation of interleukin-13 biosynthesis [Evidence NAS]; GO:0045410 - positive regulation of interleukin-6 biosynthesis [Evidence NAS]; GO:0046330 - positive regulation of JNK cascade [Evidence IGI] [Evidence IDA]; GO:0009617 - response to bacterium [Evidence IMP]; GO:0042088 - T-helper 1 type immune response [Evidence ISS]
codon_start
: 1
note
: lipopolysaccharide response
product
: toll-like receptor 4
protein_id
: NP_067272.1
name
LOC667499
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:667499
definition
number
: 1
pseudo
: _no_value
name
LOC100039379
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100039379
definition
number
: 5
pseudo
: _no_value
name
LOC100039379
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100039379
definition
number
: 4
pseudo
: _no_value
name
LOC100039379
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100039379
definition
number
: 3
pseudo
: _no_value
name
LOC100039379
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100039379
definition
number
: 2
pseudo
: _no_value
name
LOC100039379
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100039379
definition
number
: 1
pseudo
: _no_value
name
LOC433715
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149252576
GeneID:433715
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 mRNAs, 910 ESTs, 7 Proteins
product
: similar to ribosomal protein S2
pseudo
: _no_value
transcript_id
: XR_031517.1
clone name
MSMg01-531H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-411P02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-426K12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-064N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066J18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-055P02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-366K10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-493C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-189N06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-135N05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-435L13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-428J09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-233F23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-452A06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-502A14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-058F04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136B16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-151C23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-389L01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-326B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-148C20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-487B15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-299F07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-275H17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291E06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-278E21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-487O01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-357N17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-114N12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-271O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-203F18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-338I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-385P23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-163O11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-329F10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-306B18
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-402P12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-463H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-350K24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-418M24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-082C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-512I20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136B15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-500J22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-457H01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-125L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-060G02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-347M14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-058H01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-061I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-377L13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-463E03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-060B05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520M13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-347K21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-334J17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-485E06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-210K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-197N16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-421O15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-087O04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-418N12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-302I22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-495A14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-432C05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-070N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-074L08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-522J14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-090B11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439M14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-272J07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-178I21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517G22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-305J14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291J02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-110E12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517P04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-325L05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-372I23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-347M05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322C10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136O04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533F20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-059J24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-453C10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-447I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-533A08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-156D22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-013P15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-047H18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-112B02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-086I13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-300N23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-271G06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-008H05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-090J08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-093B08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-296I12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-131N14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-159G21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-259L04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-034D16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-250H07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-196G04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-221O04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-093D20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-350L11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-152M10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-153B16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-070N22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-258H07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-321J17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-169A02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-055D22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-060G18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-163A08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-187N02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-328D22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-063F17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-032C19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-308K03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-145D19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-075F19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-285D04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-325O21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-267D18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-018K01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-085I02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-161J05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-102C18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-071F20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-192D11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-020F16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-027I23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-326D17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-159B11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-166J23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-213C06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-140C09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-164F11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-085D04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-309O13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-112B24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-300D11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-069I19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-220G02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-263N24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-180O22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-316N09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-201M06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-040A18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-086C14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-017O16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-183J20
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