BAC Information

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BAC

Clone NameMSMg01-377O23
Chromosome4 (Build37)
Map Location 70,366,394 - 70,366,661
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433716, LOC100039888, LOC242497, LOC671064, Cdk5rap2, Megf9
Downstream geneLOC100039565, LOC100039979, LOC667638
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377O23.T7 (MSMg01no377_o23.b1)MSMg01-377O23.TJ (MSMg01no377_o23.g1)
ACCAG482900AG482901
length701798
length of high quality
(start - end)
272 (52 - 323)372 (78 - 449)
definitionCHROMAT_FILE: MSMg01no377_o23.b1 PHD_FILE: MSMg01no377_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:17 2005CHROMAT_FILE: MSMg01no377_o23.g1 PHD_FILE: MSMg01no377_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTCAGTTCTGACCACTAAAGGATTCCTGTTTGATGTACA
TTAGCCATATCAATATTAACAACATTCTGCTGGCGCTCAGTGCTGACTGC
AGAGCCCTGTTAGCTTTGGTCTTGTATTTTAACTAGTTGTGGAAGCACAG
AGAGACTTGTTCTTGGATTGAACTCGACCTGCCTCTGGGAATGCTTTCTG
CTCCATCCATTTTGAAAGCTTTATTCAATTAGATTTCACTGCCTCTCTCC
TTCTTAGCACTTGCTCCCATGGGAAAAAGAATAATGCTCAGATTCTGACA
TTGACACACCAGAGGCTTCGCTGAAAGGNNGTGTCTTTCACTTGCCCCAT
CTTTCCAAAAGGGAATTTGGTGGAAATCCGAAAATAAAAACCCCCCCTAA
AAAGAAAAGGCCCCCAACCTGAAAAATTTTAGGCTTTTTTTGGGCCCATA
TAAATTTTGGGCCCCTTTTTCCGGGGGGAAAATGAATCTCTTTTTACGCT
TNCCAAAATAATGTTATATTGGGCCCCCAAGGGTTTTCTCCGGGTGTGTT
TATTTTACCCAACATTATTCCCCCGCCGTTCTCCTCTTCCTTCGGGGAGA
AAAAAAAAATTTTATCCGCCCTGTTTTTTAAAAAAACAACGGGGTCGGTA
G
NNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTACACTGCTTTTTGTCCTACT
GATAATCAGGGGTCAGGAAAGAGGGTGACATTATCCTTACACTACTTCCT
GCTAAGTCATTGGAGTGGGCCTCTGATTCCACAGCCAGGGGCTGATAATC
CTGTAATAACAACCGATTAAAGGGCTGGTTAGAAATCTTGAATTTGCTGT
TGAACAAATCTAGGCAGGAAGTTTATAAGACAGGGAACAATTAGTAACAT
TAAGAAAAGGAGGAGAAAGGGAGGGTAAAAAGATAAAATTCCATTCTGTA
TTAGACCATCAACTATCCATTGGCCAGAAGCAATGAGATGTTTTTGTAGA
TCTGTCTGGAGTTTTTGGATCTTGTCCTTTACTACATCCAATCACTTTAC
ATANAAGCAACACTTCCCCCCAAGGAAGAGGCAAATACCACCCTTCTACC
CTCTTATTAGAATAAACCCTTGTTTATTTTTTATTAAGACAGTAACCCCG
GGGGCTTTTTGATTCTGAAGAATGGAAAAATATTGGAGCCACCCTTGGAG
GGCTTGGTAAACGAATAAAAAATATTACACCCTTTTCCCCAAATTATATC
CTTATTTTATAAAAAGAACACTCCACACAGTTTCTCACACCCGTTGTTTG
CCCGCCTTTACCCCCCACACCCTTGGGCGGGTTCTATCACCCTTTTTTTT
TCCCCGCCTCTTGTGCTTTCCAACCCTATTTCTCTCTCTCTAAAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_o23.b1 MSMg01no377_o23.b1 CHROMAT_FILE:
MSMg01no377_o23.b1 PHD_FILE: MSMg01no377_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:17 2005
         (272 letters)



>mm_chr4_70366190_70366861
          Length = 672

 Score =  495 bits (256), Expect = e-144
 Identities = 265/268 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcagttctgaccactaaaggattcctgtttgatgtacattagccatatcaata 64
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaattcctcagttcagaaaactaaaggattcctgtttgatgtacattagccatatcaata 413

                                                                       
Query: 65  ttaacaacattctgctggcgctcagtgctgactgcagagccctgttagctttggtcttgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttaacaacattctgctggcgctcagtgctgactgcagagccctgttagctttggtcttgt 353

                                                                       
Query: 125 attttaactagttgtggaagcacagagagacttgttcttggattgaactcgacctgcctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 attttaactagttgtggaagcacagagagacttgttcttggattgaactcgacctgcctc 293

                                                                       
Query: 185 tgggaatgctttctgctccatccattttgaaagctttattcaattagatttcactgcctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgggaatgctttctgctccatccattttgaaagctttattcaattagatttcactgcctc 233

                                       
Query: 245 tctccttcttagcacttgctcccatggg 272
           ||||||||||||||||||||||||||||
Sbjct: 232 tctccttcttagcacttgctcccatggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)