GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAACAACTCTCTTAAAGAAATACAGGAGAACACTGCTAAAGAG
TTACAAGTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGT
CCTTAAAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAG
AAAAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATA
CTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGC
GACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCA
GCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAA
GACTCCATAGAAAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAA
AAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGAC
CAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAA
GGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCT
AAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATA
GACTGGACCAGAATAGAAATTCCCTCCCGAACATAATAATCAGAACACCA
AATGCACTAAATAAAGATAGAATACTAATAGCAGTAAGGGAAAAAGGTCA
GTAACN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGGCTTTCTTTTTTTTTTT
TTTTTTTCTCCTGGCTTTCTTACACTCACATTCACACCAATTCCATTGGA
AGGAAATGAGATAAATGAAAAGACCAAGATACACGTGCATCTGATATGTT
CCTGATAAATCTGTATGTAGTTTGCAATTTTCTTTTCTGTTTTTTAACGG
TCACAAGAAGTTTTTGGTTTTGTTTTTTATTTTTAATCTTTTTTTTTATA
GCTCAGATTTCATTCCCCTCCTGGACCACCTTCTGACTGTTCCATATCCC
ATACCTTTCCCTAACCTCCCATCTCCATTAGGATGTCCCCAGTCACAAGC
CCCTGACCCATCAGACCTCCCCACTCCCTGGGGCCTCAAGTCTCTTGAGG
GTCAGTTAGGTGCATCTTCTCTGACTGAGTCCAGACCCACCAGTCCTCTA
CTATATATGTAGTGGGGGCCTCATATCAGCTGATGCAGGCTGCTGGTTGG
TGGTCCAGTGTTTGAGATATCTCAGGAGTTCAGGTTAGTTGAAACTGCTG
GCCCTCCTACAGAGTTGCCCTCCTCACCTTCTTCCAGCTTTTCTCTAATT
CACCCACAGGAGTCACCATCTTCTGTCCATTGGTTGGTTTGAAAATATCT
GATTCTGACCCCTCTTCCCTTCCTGCTTAGCCCTTTTTAGCCCCGCTTTG
N

Query= MSMg01no378_a04.g1 MSMg01no378_a04.g1 CHROMAT_FILE:
MSMg01no378_a04.g1 PHD_FILE: MSMg01no378_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:23 2005
         (534 letters)



>mm_chr4_49459659_49460592
          Length = 934

 Score =  774 bits (400), Expect = 0.0
 Identities = 406/408 (99%)
 Strand = Plus / Minus

                                                                       
Query: 12  ttttttttttttttttttctcctggctttcttacactcacattcacaccaattccattgg 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttttttttttttttttttctcctggctttcttacactcacattcacaccaattccattgg 349

                                                                       
Query: 72  aaggaaatgagataaatgaaaagaccaagatacacgtgcatctgatatgttcctgataaa 131
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aaggaaatgagataaacgaaaagaccaagatacacgtgcatctgatatgttcctgataaa 289

                                                                       
Query: 132 tctgtatgtagtttgcaattttcttttctgttttttaacggtcacaagaagtttttggtt 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tctgtatgtagtttgcaattttcttttctgttttttaacggtcacaagaagtttttggtt 229

                                                                       
Query: 192 ttgttttttatttttaatctttttttttatagctcagatttcattcccctcctggaccac 251
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ttgtttttgatttttaatctttttttttatagctcagatttcattcccctcctggaccac 169

                                                                       
Query: 252 cttctgactgttccatatcccatacctttccctaacctcccatctccattaggatgtccc 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cttctgactgttccatatcccatacctttccctaacctcccatctccattaggatgtccc 109

                                                                       
Query: 312 cagtcacaagcccctgacccatcagacctccccactccctggggcctcaagtctcttgag 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 cagtcacaagcccctgacccatcagacctccccactccctggggcctcaagtctcttgag 49

                                                           
Query: 372 ggtcagttaggtgcatcttctctgactgagtccagacccaccagtcct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  ggtcagttaggtgcatcttctctgactgagtccagacccaccagtcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)