XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCT
GTCAATATCTAAATATGCTCAAATTTGTTTTCAAGGACTTTCAATAGAAT
ATTGAAGAGTAGTTCTCTATTAGACAGCACCATGCAGCTACTTGAAGAGT
AACCTTTCAAAAAGTTACCATATTGAAAACATTTCTTTGCTTATGAAATT
CTCATGTATAAGACCATTTCCTTGGATTAATTTACTGTAGATGAAGCAGG
TAATGATTCAAAATTCAAAATGTTGTGTGGAAGGAAAATTTAACTATGGT
GTCCAGGAATCAATTATACAACTTCAAGTGGTTTCAGAGGAAGAAATGTA
TTATATATGGTGCCAGGCCATTCAACTTGAGAGTTTTTCTTTCCTTAAGG
ATTTGAGGGGTGTTTAGGAGTGGTAATAGTCTATTGAAGGCAGTTATGCC
ACCATACTATACAATAGAAAGGAAGACAGAATCATTTCTCTCTCTCTCTC
TCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACAC
GTACACACACATGCACATGCAGCAAGTAGAGGAAAGTAACATTTATCACT
CAATGAAGCAAGAATTAAAATTATAAACATCCATCTATGTAATGTANGCA
CATTTAGTACTGAAAGAAGGAGTGTCATTGCATGCCTGTACGTTCAACTA
TCTGCGGGCTGAAAAAAAAAGATGCAAAGGGTCACTCCCCCGTAAGATCT
GGAAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTTCATGTGGCTATCTTCTTTTTGAAAGATT
ACTTTCTTGTTTTTTATAGGGCATAGTTTCCCTCCTTGTGTTGGAGTTTT
CCTTTTATTATCCTTTGAAAGGCTGTACTTTTGGAAAGATATTGTGTAAA
TTTGGTTTTGTCATGGAATACTTTGGTTTCTTCATCTATGGTAATTGAGA
GTTTTATTGGGTATAGTTGCCTGAGCTGGTATATGTGTTTTCTTAGGGTC
TGTATGACATCTGCTCAGTATCTTCTGGCTTTCATAGTCTCTGGTTAGCA
GTCTGAATCAGAACTCCTCAGAGTCCAGCTTTCTCTGTGATCCTGAGATT
CCAGTTGCCTATGATTCTTAGATCTGGGTGTGTCAGAGTTCCTGGGAGTC
AAGTTGCTTCAGAGACTCTGAGATCCTGGTGTGACCACGTTCCTGGGATT
CTGGGATCCTGGGACCCATAGATCCTGGGATTGGTACCTCCTCTAGGGGC
TGTTGGACTATCTGCTGAGTTTGTGACCAAGGTAGACTGGCCCTTATTGT
TTTAAATCCTCATCTATAAGAATCTTATTGGTCCCAACATGAACTAGTAT
GTTTTAATTTAACCAATGAAGGAAAATTTTTATGGGGCTAAATATTTTTT
TATGATACCTACTCCTCGCCGGGGATCCCCCGGGTTTCATTTCAATTGAA
AACTAAATTTCCTTCGGGCCG

Query= MSMg01no379_a23.b1 MSMg01no379_a23.b1 CHROMAT_FILE:
MSMg01no379_a23.b1 PHD_FILE: MSMg01no379_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:43 2005
         (587 letters)



>mm_chr4_15568963_15569950
          Length = 988

 Score =  820 bits (424), Expect = 0.0
 Identities = 523/582 (89%), Gaps = 41/582 (7%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctgtc-aatatctaaatatgctcaaatttgttttcaaggactttcaatagaatat 65
           |||||||||| || ||||||||||| |||||| ||||||||||||||||| |||||||| 
Sbjct: 646 gaattctgtcaaaaatctaaatatgttcaaatgtgttttcaaggactttctatagaatac 587

                                                                       
Query: 66  tgaagagtagttctctattagacagcaccatgcagctacttgaagagtaacctttcaaaa 125
           || ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 586 tggagagtagttctctattagacagcaccatgaagctacttgaagaataacctttcaaaa 527

                                                                       
Query: 126 agttaccatattgaaaacatttctttgcttatgaaattctcatgtataagaccatttcct 185
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 526 agttaccatattgaaaacatttccttgcttatgaaattctcatgtataagaccatttcct 467

                                                                       
Query: 186 tggattaatttactgtagatgaagcaggtaatgattcaaaattcaaaatgttgtgtggaa 245
           ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgggttaatttactgtagatgtagcaggtaatgattcaaaattcaaaatgttgtgtggaa 407

                                                                       
Query: 246 ggaaaatttaactatggtgtccaggaatcaattatacaacttcaagtggtttcagaggaa 305
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 406 ggaaaatttaactatggtgtccaggaatcagttatacaacttcaagtggtttcagagaaa 347

                                                                       
Query: 306 gaaatgtattatatatggtgccaggccattcaacttgagagtttttctttccttaaggat 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gaaatgtattatatatggtgccaggccattcaacttgagagtttttctttccttaaggat 287

                                                                       
Query: 366 ttgaggggtgtttaggagtggtaatagtctattgaaggcagttatgccaccatactatac 425
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 286 ttgaggggtgtttaggagtggtaatagtctattgaaggcagttatgccaccacactatac 227

                                                                       
Query: 426 aatagaaaggaagacagaatcatttctctctctctctctctctctctctctcacacacac 485
           |||||||||||||||||||| |||||||||||||||||||||                  
Sbjct: 226 aatagaaaggaagacagaataatttctctctctctctctctc------------------ 185

                                                                       
Query: 486 acacacacacacacacacacacacacacgtacacacacatgcacatgcagcaagtagagg 545
                                 ||||||||||||||| ||||||||||| ||||||||||
Sbjct: 184 ----------------------acacacgtacacacatatgcacatgcaacaagtagagg 147

                                                     
Query: 546 aaagtaacatttatcactcaatgaagcaagaattaaaattat 587
           |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 146 aaagtaacatttatcactcagtgaagcaagaattaaaattat 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space:   564306
Effective search space used:   564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)