BAC Information

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BAC

Clone NameMSMg01-379E23
Chromosome4 (Build37)
Map Location 13,196,897 - 13,378,984
singlet/doubletdoublet
Overlap genenone
Upstream geneOTTMUSG00000004461
Downstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030, LOC433688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379E23.T7 (MSMg01no379_e23.b1)MSMg01-379E23.TJ (MSMg01no379_e23.g1)
ACCAG483953AG483954
length741744
length of high quality
(start - end)		536 (44 - 579)489 (71 - 559)
definitionCHROMAT_FILE: MSMg01no379_e23.b1 PHD_FILE: MSMg01no379_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:02 2005CHROMAT_FILE: MSMg01no379_e23.g1 PHD_FILE: MSMg01no379_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,378,453 - 13,378,984)(13,196,897 - 13,197,385)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAATCAATGCCACGTGACTTTGAAAATGAATGTGGTCTTTCAAGCCG
CTGTACTTGAGCTGTGATATTAATCATAACTTCATGGTACAGTAAAGCTT
ATGACAAACGCTTATCAAGAGGACTCAGAAAAAAAAAAGCTGGTTTGGGT
GTGACAAGAAAATTTAGAAATAGAAAGATTCTTTTCTGTTCCCCATTGCC
AGCCCGTTTATTGGCTACTGTGTGTGTTCTGTTGTCTTTCTTCAATTATC
TCAAAAGAGGTTGACGTGAATTGCATGCCATCGGCATAATTGTTTTTCCC
CCTCCCCCCGAATGTGACATTTTGCACATAGCTTATTTCCTCACACAGTC
TTGGGAGTGTTATTTAACATTAAATGGTACCAGGGAACTGGTGTGCCAGG
CTGCTAAGGATGCATTAAGTAGCGCAGCAAACCTCCTCGACACAGGAGGG
AATTTTAGCTTTGCCCATTAGAGCTCTGAATTCTCTGTAAATGCACCCTG
GACCTGAAGAAGGTTGAGTATAAACATAGAGGTCTCCTGGTAGGCAAGAG
AGAAAGGGATGCTGACTTAAATAATCATTTTAAAAATCAGTTATCAAGTG
TTTTCTCGCCTTAAAGGAAATGTAATTAATTTTTGACACAGTGACATTAA
AAGGTTTATTACGAACCACATGCGTTAAAGGTCAAATCTCC

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCATTATTTCTGAACTTAGTTTGTGTTGCG
ATTTCCTTCACACTACAGCTCGTCTGGGTTCAAGAGAGAAAGGTATGGCT
GCAGATGTGCACCCCCCAAAAAAATGAGGCATTGGGACTGGAGTGTAAAG
ACCTGAGAGTGGGAACTTAGCAAGCTAGGTGGAGAGATTATGGAGTTCTG
AGTCAGAGCCTCCACAAGATAAAAACAAGTTGGCCATTGCCAGCCAGTGC
ATGGTAGGCCAGGCTGCTGTGGCAGAGGCACAAGTGGGAGAGCGTGACAG
ATCAATTTTTAAAAAAAAATATTTCCCGCAACTATCAATCATGTTGACTA
GTGCTCACTTTAGAAAAGGCCACAGAGTGAAAACAAAAGTAAAGATGGGT
GGTCCAAATCTACTTCTAAACAAAAGTAAGGATGGGTGGTCCAAATCTAC
TTCTCATGATAACTAGTGGCCATGGCAACTCCAAGACCATGGCAATAATG
CTGATCTCCATTCTGGTTCCCATGATGCATGAGTACTGATGGAAACGTTC
AAAAATCCGTTATGCTTTTCATTGGTGCATGTTAATAAAACCTCTCAAGG
GTAAGGCATGCTATGAAACCCATGTTTATTTTTCTGAATAATTTCAAAAC
TATTTCCGGACCCCTGCCTTTTTTTAAAGGCCCTAAAATTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_e23.b1 MSMg01no379_e23.b1 CHROMAT_FILE:
MSMg01no379_e23.b1 PHD_FILE: MSMg01no379_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:02 2005
         (536 letters)



>mm_chr4_13378249_13379184
          Length = 936

 Score =  998 bits (516), Expect = 0.0
 Identities = 528/532 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaatcaatgccacgtgactttgaaaatgaatgtggtctttcaagccgctgtact 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gaattctaatcaatgcgacgtgactttgaaaatgaatgtggtctttcaagccgctgtact 677

                                                                       
Query: 65  tgagctgtgatattaatcataacttcatggtacagtaaagcttatgacaaacgcttatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgagctgtgatattaatcataacttcatggtacagtaaagcttatgacaaacgcttatca 617

                                                                       
Query: 125 agaggactcagaaaaaaaaaagctggtttgggtgtgacaagaaaatttagaaatagaaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agaggactcagaaaaaaaaaagctggtttgggtgtgacaagaaaatttagaaatagaaag 557

                                                                       
Query: 185 attcttttctgttccccattgccagcccgtttattggctactgtgtgtgttctgttgtct 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 556 attcttttctgttccccattgccagcccatttattggctactgtgtgtgttctgttgtct 497

                                                                       
Query: 245 ttcttcaattatctcaaaagaggttgacgtgaattgcatgccatcggcataattgttttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttcttcaattatctcaaaagaggttgacgtgaattgcatgccatcggcataattgttttt 437

                                                                       
Query: 305 ccccctccccccgaatgtgacattttgcacatagcttatttcctcacacagtcttgggag 364
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ccccctccccccaaatgtgacattttgcacatagcttatttcctcacacagtcttgggag 377

                                                                       
Query: 365 tgttatttaacattaaatggtaccagggaactggtgtgccaggctgctaaggatgcatta 424
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 376 tgttatttaacattaaatggtaccagggaactggtgtgccagtctgctaaggatgcatta 317

                                                                       
Query: 425 agtagcgcagcaaacctcctcgacacaggagggaattttagctttgcccattagagctct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agtagcgcagcaaacctcctcgacacaggagggaattttagctttgcccattagagctct 257

                                                               
Query: 485 gaattctctgtaaatgcaccctggacctgaagaaggttgagtataaacatag 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gaattctctgtaaatgcaccctggacctgaagaaggttgagtataaacatag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no379_e23.g1 MSMg01no379_e23.g1 CHROMAT_FILE:
MSMg01no379_e23.g1 PHD_FILE: MSMg01no379_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:02 2005
         (489 letters)



>mm_chr4_13196697_13197585
          Length = 889

 Score =  922 bits (477), Expect = 0.0
 Identities = 486/489 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccattatttctgaacttagtttgtgttgcgatttccttcacactacagctcgtctgggtt 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ccattatttctgaacttagtttgtgttgcgttttccttcacactacagctcgtctgggtt 260

                                                                       
Query: 61  caagagagaaaggtatggctgcagatgtgcaccccccaaaaaaatgaggcattgggactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagagagaaaggtatggctgcagatgtgcaccccccaaaaaaatgaggcattgggactg 320

                                                                       
Query: 121 gagtgtaaagacctgagagtgggaacttagcaagctaggtggagagattatggagttctg 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 gagtgtaaagacctgagagtgggaacttagcgagctaggtggagagattatggagttctg 380

                                                                       
Query: 181 agtcagagcctccacaagataaaaacaagttggccattgccagccagtgcatggtaggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcagagcctccacaagataaaaacaagttggccattgccagccagtgcatggtaggcc 440

                                                                       
Query: 241 aggctgctgtggcagaggcacaagtgggagagcgtgacagatcaatttttaaaaaaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggctgctgtggcagaggcacaagtgggagagcgtgacagatcaatttttaaaaaaaaat 500

                                                                       
Query: 301 atttcccgcaactatcaatcatgttgactagtgctcactttagaaaaggccacagagtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttcccgcaactatcaatcatgttgactagtgctcactttagaaaaggccacagagtga 560

                                                                       
Query: 361 aaacaaaagtaaagatgggtggtccaaatctacttctaaacaaaagtaaggatgggtggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacaaaagtaaagatgggtggtccaaatctacttctaaacaaaagtaaggatgggtggt 620

                                                                       
Query: 421 ccaaatctacttctcatgataactagtggccatggcaactccaagaccatggcaataatg 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 ccaaatctacttctcatgataactagtggccatggcaactccaagcccatggcaataatg 680

                    
Query: 481 ctgatctcc 489
           |||||||||
Sbjct: 681 ctgatctcc 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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