Query= MSMg01no379_h24.b1 MSMg01no379_h24.b1 CHROMAT_FILE:
MSMg01no379_h24.b1 PHD_FILE: MSMg01no379_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:17 2005
(487 letters)
>mm_chr4_75714010_75714897
Length = 888
Score = 849 bits (439), Expect = 0.0
Identities = 472/483 (97%), Gaps = 1/483 (0%)
Strand = Plus / Plus
Query: 6 aattctaagtta-ctaccggggcatgatagaatggttccctgtatgaatagacttgatgg 64
|||||||||||| | | ||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 206 aattctaagttagcaaatggggcatgatagaatggctccctgtatgaatagactggatgg 265
Query: 65 gtaacaaaaattgaaaaccatccataggagagatgaatatgagagattttccacctaatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtaacaaaaattgaaaaccatccataggagagatgaatatgagagattttccacctaatt 325
Query: 125 tttacacaaaatcaagaaatctaacgccatgtttaagtgctgaccatttgaatcattttt 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 326 tttacacaaaatcaagaaatctaatgccatgtttaagtgctgaccatttgaatcattttt 385
Query: 185 attcaattagtatgtaggtaatttttgtgtgtctgctttcattaacatagatgaatacca 244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 386 attcaattagtatgtaggtaatttttgtgtatctgctttcattaacatagatgaatacca 445
Query: 245 cctttccttttcctagattttttaacatgcaaattataaaactcttgatgccaaataatt 304
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cctttccttttcctagatattttaacatgcaaattataaaactcttgatgccaaataatt 505
Query: 305 aatataatatcatacttgaagggtgactattaaggctattgtcaatgttcagtatatgat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aatataatatcatacttgaagggtgactattaaggctattgtcaatgttcagtatatgat 565
Query: 365 agtctatgtaaccctggggaaaatatactacggatactatgaatagtcttttgaagttgg 424
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 566 agtctatgtaaccctggggaaaatatactacggatgctatgaatagtcttttgaagttgg 625
Query: 425 tcaatcaaaagcatttaccatcagttgtttatgtgactctatttctgcttctacttcact 484
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 626 tcaatcaaaagcatttaccatcagttgtttatgagactctatttctgcttctacttcact 685
Query: 485 gat 487
|||
Sbjct: 686 gat 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 888
Length adjustment: 10
Effective length of query: 477
Effective length of database: 878
Effective search space: 418806
Effective search space used: 418806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_h24.g1 MSMg01no379_h24.g1 CHROMAT_FILE:
MSMg01no379_h24.g1 PHD_FILE: MSMg01no379_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:17 2005
(381 letters)
>mm_chr4_75919789_75920568
Length = 780
Score = 704 bits (364), Expect = 0.0
Identities = 377/382 (98%), Gaps = 3/382 (0%)
Strand = Plus / Minus
Query: 1 ttggaaaatagtgaagtctggctcattttgaattgtactgtgaccctggaggagagttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttggaaaatagtgaagtctggctcattttgaattgtactgtgaccctggaggagagttac 521
Query: 61 a-tttttttctctgactgtatcttaatcatcatgtagcccaggggagccaaacattttat 119
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 attttttttctctgactg--tcttaatcatcatgtagcccaggggagccaaacattttat 463
Query: 120 atgttttaacaagctaagtgatattatgaaagtgctgctaggaggatttattttaattgg 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 462 atgttttaacaagctaagtgatattatgaaagtgctgctaggaggatgtattttaattgg 403
Query: 180 aagttaagacatcttgatcttaaatcatttggtgcattacttaagagttatgttctagtt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aagttaagacatcttgatcttaaatcatttggtgcattacttaagagttatgttctagtt 343
Query: 240 tagctttcataagtgcagtcgctaatttttctttggtcatcaaacaatccctgcattagc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tagctttcataagtgcagtcgctaatttttctttggtcatcaaacaatccctgcattagc 283
Query: 300 atcttacttattttcacttgtgctaacacccggcttcttaaaagttgaaaccatacattc 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atcttacttattttcacgtgtgctaacacccggcttcttaaaagttgaaaccatacattc 223
Query: 360 aaaatatgtgtctagtttagat 381
||||||||||||||||||||||
Sbjct: 222 aaaatatgtgtctagtttagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 780
Length adjustment: 9
Effective length of query: 372
Effective length of database: 771
Effective search space: 286812
Effective search space used: 286812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
