BAC Information

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BAC

Clone NameMSMg01-379K24
Chromosome4 (Build37)
Map Location 12,448,620 - 12,582,154
singlet/doubletdoublet
Overlap genenone
Upstream gene1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379K24.T7 (MSMg01no379_k24.b1)MSMg01-379K24.TJ (MSMg01no379_k24.g1)
ACCAG484240AG484241
length774760
length of high quality
(start - end)		474 (40 - 513)496 (67 - 562)
definitionCHROMAT_FILE: MSMg01no379_k24.b1 PHD_FILE: MSMg01no379_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:31 2005CHROMAT_FILE: MSMg01no379_k24.g1 PHD_FILE: MSMg01no379_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,448,620 - 12,449,089)(12,581,809 - 12,582,154)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAGTCCGTGTATTTAGTCAGCACTCACTGTGGAAGGAGCTACAACAACAT
GACAAGCTTGCTACAAACCCCCAAATTAATTATGCTATCCAGTAGAGGGT
AGCCCGGGAGTGTATTTCCGGAGGTGTGTACCTGGGGTCAGAAGAGAGCC
TCCCCCCACCCCCAGAAATTGGTGATTCTAATGAGATGTCAAAACAAAGT
CACTAGGCCAAAACAAGTTTGAGAAATGACTCCTTTATCTTATCCCAAAG
CTTAGACTTTCCACTTCCTTGTCTTCATTTGTTCAACCTTTACCTTTTAA
AGTACCTTGTTCTGACTCTGTTCCTCTGTTAGATTTCTGCTGATACTTAG
TTGCCAAAGTGCCAGCACTAGAAAGTGGGTGGCAAGTCAGGAGATGGCGG
CGTCCACATGAGTGCAATTATTCTCCTTAAGGAAGAGGTGCAAAGAACAG
CCTTGTCCCTCCAACTGCAAGGACACAATAGAGGCCACACCCTCCCCCAT
GCTAAATTTGCTGGCACCTTGATTTTGGATTTCCCAGTTTCTAGGAATCT
GAGTCCATTTATGTCCCTTAGAAATTATCCAGCGGAAGGAATTTTGGTGG
TGGGGTCCCATTTGAAATAAAACCTTTGTTTGAGAACAGGATTATGTTAG
GCTTGATATTTATTTGCTGCCTAAGAAAACCTTGGTTTAGCTTATTTATT
AAAGGGGCGGACCTTTCATTAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTCTCTTCTGTCACCACAGGCAGAAAGAGACAT
TGGAGGAGCACTCCACTAATCCTTTTGACTTCTATACCACAGCAAAGGCA
GACTTGGGACAACTGAGACTTAGAAGGTGATGGCCTCAGCCATATAAAGA
ACACTCACACTCAATCAATTTTAATTTTGAAATACTGAGGTTTTAAAAGA
AGTTGGAAAATATAATACAGAAAAATTTCCTCATCCCATTGCCCGTATTG
GAAACACCTTGTACAGTCATGATATCACAGCCAGGAATCTTGACAGGGAT
GCAAAGGAGCATATAAAATCTGTCCATCAGCACAGGGTGCCTCATGTCAC
CATTCTATAGTGACACCCACGTCATCCTCCCATGTCAGCTCACATCACTG
CTAATCTGCTCGTCTCTTCTATAATTCTTTTTAATTTTTGAATATTATAT
AGGGTCTGGAGAGATGGCTCAGTAAGTAAGAGTGCTTGCTGGCAAAGAAT
GTGGACATCGGTTCAAATCCACAAAAGCCACATAAAACACCAAGCATGGT
CACTTATGCCTGTAATCCACTGTGCATGGTACCGAGGTGACAGCATCCCT
GGGTTTTACTGTTGCTCAGTTTAACTCCCGATTTAGTGACAGGCCAGGTC
TCCTAGCCTACCCTTAAATGGAGTACCTAAACCCTTTGGTACCCTCTATG
GGGCCGGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_k24.b1 MSMg01no379_k24.b1 CHROMAT_FILE:
MSMg01no379_k24.b1 PHD_FILE: MSMg01no379_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:31 2005
         (474 letters)



>mm_chr4_12448416_12449289
          Length = 874

 Score =  893 bits (462), Expect = 0.0
 Identities = 468/470 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagtccgtgtatttagtcagcactcactgtggaaggagctacaacaacatgac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagtccgtgtatttagtcagcactcactgtggaaggagctacaacaacatgac 264

                                                                       
Query: 65  aagcttgctacaaacccccaaattaattatgctatccagtagagggtagcccgggagtgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagcttgctacaaacccccaaattaattatgctatccagtagagggtagcccgggagtgt 324

                                                                       
Query: 125 atttccggaggtgtgtacctggggtcagaagagagcctccccccacccccagaaattggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 atttccggaggtgtgtacctggggtcagaagagagcctccccccacccccagaaactggt 384

                                                                       
Query: 185 gattctaatgagatgtcaaaacaaagtcactaggccaaaacaagtttgagaaatgactcc 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattctaatgagatgccaaaacaaagtcactaggccaaaacaagtttgagaaatgactcc 444

                                                                       
Query: 245 tttatcttatcccaaagcttagactttccacttccttgtcttcatttgttcaacctttac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttatcttatcccaaagcttagactttccacttccttgtcttcatttgttcaacctttac 504

                                                                       
Query: 305 cttttaaagtaccttgttctgactctgttcctctgttagatttctgctgatacttagttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttttaaagtaccttgttctgactctgttcctctgttagatttctgctgatacttagttg 564

                                                                       
Query: 365 ccaaagtgccagcactagaaagtgggtggcaagtcaggagatggcggcgtccacatgagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccaaagtgccagcactagaaagtgggtggcaagtcaggagatggcggcgtccacatgagt 624

                                                             
Query: 425 gcaattattctccttaaggaagaggtgcaaagaacagccttgtccctcca 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcaattattctccttaaggaagaggtgcaaagaacagccttgtccctcca 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no379_k24.g1 MSMg01no379_k24.g1 CHROMAT_FILE:
MSMg01no379_k24.g1 PHD_FILE: MSMg01no379_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:31 2005
         (496 letters)



>mm_chr4_12581809_12582704
          Length = 896

 Score =  638 bits (330), Expect = 0.0
 Identities = 342/346 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctcttctgtcaccacaggcagaaagagacattggaggagcactccactaatcctttt 60
           |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 346 tctctcctctgtcaccacaggctgaaagagacattggaggagcagtccactaatcctttt 287

                                                                       
Query: 61  gacttctataccacagcaaaggcagacttgggacaactgagacttagaaggtgatggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gacttctataccacagcaaaggcagacttgggacaactgagacttagaaggtgatggcct 227

                                                                       
Query: 121 cagccatataaagaacactcacactcaatcaattttaattttgaaatactgaggttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cagccatataaagaacactcacactcaatcaattttaattttgaaatactgaggttttaa 167

                                                                       
Query: 181 aagaagttggaaaatataatacagaaaaatttcctcatcccattgcccgtattggaaaca 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 166 aagaagttggaaaatataatacaggaaaatttcctcatcccattgcccgtattggaaaca 107

                                                                       
Query: 241 ccttgtacagtcatgatatcacagccaggaatcttgacagggatgcaaaggagcatataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ccttgtacagtcatgatatcacagccaggaatcttgacagggatgcaaaggagcatataa 47

                                                         
Query: 301 aatctgtccatcagcacagggtgcctcatgtcaccattctatagtg 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  aatctgtccatcagcacagggtgcctcatgtcaccattctatagtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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