Query= MSMg01no380_d15.b1 MSMg01no380_d15.b1 CHROMAT_FILE:
MSMg01no380_d15.b1 PHD_FILE: MSMg01no380_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:14 2005
(602 letters)
>mm_chr4_12448416_12449417
Length = 1002
Score = 1114 bits (576), Expect = 0.0
Identities = 593/600 (98%), Gaps = 4/600 (0%)
Strand = Plus / Plus
Query: 5 gaattctcagtttccgt--atttagtcagcactcactgtggaaggagctacaacaacatg 62
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagt--ccgtgtatttagtcagcactcactgtggaaggagctacaacaacatg 262
Query: 63 acaagcttgctacaaacccccaaattaattatgctatccagtagagggtagcccgggagt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acaagcttgctacaaacccccaaattaattatgctatccagtagagggtagcccgggagt 322
Query: 123 gtatttccggaggtgtgtacctggggtcagaagagagcctccccccacccccagaaattg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 323 gtatttccggaggtgtgtacctggggtcagaagagagcctccccccacccccagaaactg 382
Query: 183 gtgattctaatgagatgtcaaaacaaagtcactaggccaaaacaagtttgagaaatgact 242
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtgattctaatgagatgccaaaacaaagtcactaggccaaaacaagtttgagaaatgact 442
Query: 243 cctttatcttatcccaaagcttagactttcctcttccttgtcttcatttgttcaaccttt 302
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 443 cctttatcttatcccaaagcttagactttccacttccttgtcttcatttgttcaaccttt 502
Query: 303 accttttaaagtaccttgttctgactctgttcctctgttagatttctgctgatacttagt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 accttttaaagtaccttgttctgactctgttcctctgttagatttctgctgatacttagt 562
Query: 363 tgccaaagtgccagcactagaaagtgggtggcaagtcaggagatggcggcgtccacatga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgccaaagtgccagcactagaaagtgggtggcaagtcaggagatggcggcgtccacatga 622
Query: 423 gtgcaattattctccttaaggaagaggtgcaaagaacagccttgtccctccaactgcaag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtgcaattattctccttaaggaagaggtgcaaagaacagccttgtccctccaactgcaag 682
Query: 483 gacacaatagaggccacaccctcccccatgctaaatttgctggcaccttgattttggatt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gacacaatagaggccacaccctcccccatgctaaatttgctggcaccttgattttggatt 742
Query: 543 tcccagtttctaggaatctgagtccatttatgtcccttagaaattatccagtgtaaggaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcccagtttctaggaatctgagtccatttatgtcccttagaaattatccagtgtaaggaa 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_d15.g1 MSMg01no380_d15.g1 CHROMAT_FILE:
MSMg01no380_d15.g1 PHD_FILE: MSMg01no380_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:14 2005
(594 letters)
>mm_chr4_12581809_12582802
Length = 994
Score = 638 bits (330), Expect = 0.0
Identities = 342/346 (98%)
Strand = Plus / Minus
Query: 1 tctctcttctgtcaccacaggcagaaagagacattggaggagcactccactaatcctttt 60
|||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 346 tctctcctctgtcaccacaggctgaaagagacattggaggagcagtccactaatcctttt 287
Query: 61 gacttctataccacagcaaaggcagacttgggacaactgagacttagaaggtgatggcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gacttctataccacagcaaaggcagacttgggacaactgagacttagaaggtgatggcct 227
Query: 121 cagccatataaagaacactcacactcaatcaattttaattttgaaatactgaggttttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cagccatataaagaacactcacactcaatcaattttaattttgaaatactgaggttttaa 167
Query: 181 aagaagttggaaaatataatacagaaaaatttcctcatcccattgcccgtattggaaaca 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 166 aagaagttggaaaatataatacaggaaaatttcctcatcccattgcccgtattggaaaca 107
Query: 241 ccttgtacagtcatgatatcacagccaggaatcttgacagggatgcaaaggagcatataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ccttgtacagtcatgatatcacagccaggaatcttgacagggatgcaaaggagcatataa 47
Query: 301 aatctgtccatcagcacagggtgcctcatgtcaccattctatagtg 346
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 aatctgtccatcagcacagggtgcctcatgtcaccattctatagtg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
