BAC Information

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BAC

Clone NameMSMg01-380E21
Chromosome4 (Build37)
Map Location 92,101,663 - 92,102,010
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380E21.T7 (MSMg01no380_e21.b1)MSMg01-380E21.TJ (MSMg01no380_e21.g1)
ACCAG484712AG484713
length752741
length of high quality
(start - end)		530 (64 - 593)492 (72 - 563)
definitionCHROMAT_FILE: MSMg01no380_e21.b1 PHD_FILE: MSMg01no380_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:20 2005CHROMAT_FILE: MSMg01no380_e21.g1 PHD_FILE: MSMg01no380_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAAGATTCTCAGCAGCTATACTATGAGCCAGCTTGTCTGAAAGAACAAA
GTCAGGCAGATTCCTGAGTTCAAGGTCAGCCTAAAACAGAGCAAGTTTAG
GCCTAGGTGTGGTAGAAATGGTAATTTTAGGGCAGGGTCCCACCCAACTA
GTTTATCATTTGTGCTTAACAAAAGTAGGTGGATGTCTGAATTCTTTTGC
AATGTTAAGAAAAAAATGTATGCATACTCTCTTAAGAATCAAAGGGCTGG
GGTCACTGGACATTGATTCATAAAATAATCTAAAGGAAACCTAGATTAAA
TGACTGGTTGCTATGTAAATGACTGGACTGTGTTCTGCAGGAGATGAGCT
ATCCAGAGAATTTTTTAGAATAAAAAAGAGAACTGCTTGGAGAACACACA
CACACACACATACACACACACACACACACACACACACACACACACCCAAA
GCATGACATAGAGAGATCTCTTAAAATAGCAAACAAGCAGAATAAAGACA
AAAAATCTACCGAGAGAAAGCAGCAGTCTGGAAAAGCTGTATCAAGCAGA
TAACACATCTTTAGTTTGTATCCATGACTTGACTTTGAGTTGTTCTTTTA
TGATGCTCCCAAACATCCCTTAACTCCTTCTTTCAGAACCCTCTCCATGC
CCAAGNTTGGTCCTTGGCAAGCAGAGACCCCGCCAACATTTCCCTTTTGT
CT

TGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCTTAATAGGGACGGGTTTTCGTTTTCT
CGCTCTCTTGCTTCTTACACTCCTGCTCCTGAAGATGTAAGCAATAAAGT
TTTGCCGCAGAAGATTCTGGTCTGTTGCGTTCTTCCTGGCCGGGCGTGAG
AACGCGTCTAATAACACTCACTAGCCTGGACCTGGCCAGAAATCCTCAGG
GATCCACTTGTATCTGACTCTTCTCTTGGACTCCTACGATATCCCCAGCT
CTGACTGTTTTTGCGGACTCACAAAAAATAAAAGATAAAATCATCATACA
AGGGAAAAAATACTCTACATTTTAAAAACTACTCTCTTTTTTAATTAATT
TTTTATTAATTTATTTTTTATGCTCCATATTTTATCTGACTCCCATTCAC
CCTTCAGCTGTTCCATACTTCATACCTCTTCCCCACACCTGCCTCCATGT
GGATGTCCCCATCTCCCACCCCACCTGAGCTCTAAGCTCGCTGGGGCATC
CAGTCTCTTAAGGATTAGGTGCATCATCTCTGAATGAACACAGACCCAGC
AGTCCTCTACTATATATTTGTTGGGGGGCCTCATATCAACTGGTGTATGC
TGTCTGTTTGGGGNCCCATTTTTGAGAGACTTTGGGGGCCAGATTAATTG
TGGTTGCTGGCCTCCTAACGGATCCACCCTCTCCTTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_e21.g1 MSMg01no380_e21.g1 CHROMAT_FILE:
MSMg01no380_e21.g1 PHD_FILE: MSMg01no380_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:20 2005
         (492 letters)



>mm_chr4_92101427_92102318
          Length = 892

 Score =  634 bits (328), Expect = 0.0
 Identities = 343/348 (98%), Gaps = 1/348 (0%)
 Strand = Plus / Minus

                                                                       
Query: 146 ctcactagcctggacctggccagaaatcctcagggatccacttgtatctgactcttctct 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 584 ctcactagcctggacctggccagaaatcctcagggatccacttgtatctgattcttctct 525

                                                                       
Query: 206 tggactcctacgatatccccagctctgactgtttttgcggactcacaaaaaataaaagat 265
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tggactcctacgatatccccaactctgactgtttttgcggactcacaaaaaataaaagat 465

                                                                       
Query: 266 aaaatcatcatacaagggaaaaaatactctacattttaaaaactactctcttttttaatt 325
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aaaatcatcatacaggggaaaaaatactctacattttaaaaactactctcttttttaatt 405

                                                                       
Query: 326 aa-ttttttattaatttattttttatgctccatattttatctgactcccattcacccttc 384
           || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 404 aatttttttattaatttattttttatgctccatattttttctgactcccattcacccttc 345

                                                                       
Query: 385 agctgttccatacttcatacctcttccccacacctgcctccatgtggatgtccccatctc 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agctgttccatacttcatacctcttccccacacctgcctccatgtggatgtccccatctc 285

                                                           
Query: 445 ccaccccacctgagctctaagctcgctggggcatccagtctcttaagg 492
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccaccccacctgagctctaagctcgctggggcatccagtctcttaagg 237


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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