Query= MSMg01no380_i12.b1 MSMg01no380_i12.b1 CHROMAT_FILE:
MSMg01no380_i12.b1 PHD_FILE: MSMg01no380_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:38 2005
(576 letters)
>mm_chr4_52861054_52862029
Length = 976
Score = 1091 bits (564), Expect = 0.0
Identities = 573/576 (99%)
Strand = Plus / Minus
Query: 1 actttcattttattattattaattttttgtcagacatagacagatactgctcaagtttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 actttcattttattattattaattttttgtcagacatagacagatactgctcaagtttga 745
Query: 61 taaccacactttgcacccataagttaagatttaccacaatttatacctcacatgactcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taaccacactttgcacccataagttaagatttaccacaatttatacctcacatgactcca 685
Query: 121 cagccacagaaagcctggatctatagactgtaccgtgtattcacttagttatcctctttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagccacagaaagcctggatctatagactgtaccgtgtattcacttagttatcctctttg 625
Query: 181 aaaaaccatgttaaaagttcacgtggcatcttgttgtcattttctagtgcctcagatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaaaccatgttaaaagttcacgtggcatcttgttgtcattttctagtgcctcagatgag 565
Query: 241 tgaggtttattgttattaagtgttcctaaatcaattattcacaataacctgtgaatatta 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaggaatattgttattaagtgttcctaaatcaattattcacaataacctgtgaatatta 505
Query: 301 tccatcactcacagctccatgtatacatctgtagaaacttactaaatgttatttagcttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccatcactcacagctccatgtatacatctgtagaaacttactaaatgttatttagcttt 445
Query: 361 gttggccctgtgcatctgtgatctcctttctttttatattttctttgagaattttgtaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttggccctgtgcatctgtgatctcctttctttttatattttctttgagaattttgtaca 385
Query: 421 tgaacatcttgtaaacatcactctaatccccctttcctgttaaacacccgtgttcccctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaacatcttgtaaacatcactctaatccccctttcctgttaaacacccgtgttcccctc 325
Query: 481 tcacacccacagtctcttcttttattatttatcctgtgatatcttagtgtagaaatgact 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcacactcacagtctcttcttttattatttatcctgtgatatcttagtgtagaaatgact 265
Query: 541 ttgatatcatttcatcacctttaatgaacacatttc 576
||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgatatcatttcatcacctttaatgaacacatttc 229
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_i12.g1 MSMg01no380_i12.g1 CHROMAT_FILE:
MSMg01no380_i12.g1 PHD_FILE: MSMg01no380_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:38 2005
(536 letters)
>mm_chr4_52737655_52738590
Length = 936
Score = 886 bits (458), Expect = 0.0
Identities = 517/544 (95%), Gaps = 20/544 (3%)
Strand = Plus / Plus
Query: 1 ttgccctgactttcattgatgttgaactgtggtgtggaagtataagtggaataaa-cact 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 205 ttgccctgactttcattgatgttgaactgtggtgtggaagtataagtggaataaatc-ct 263
Query: 60 tttctcctcagagtgctccaaactgagacagacggtcttcttccgtcctcaaatggctag 119
||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||
Sbjct: 264 tttctcctcagagagctcc----tgagacagacggtcttcttccatcctcaactggctag 319
Query: 120 aaattacacagaaagccaaagctctgcattcctaagccatgaagaaaagacagacagaca 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 aaattacacagaaagccaaagctctgcattcctaagccataaagaaaagacagacagaca 379
Query: 180 gacaacaa-aaacaa-gcaaacaaacaccaatgctataggcacttcctaccaccaacaca 237
|||| || |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 -acaaaaacaaacaaag-aaacaaacaccaatgctataggcacttcctaccaccaacaca 437
Query: 238 tgtgctgttttta-----tttggcccccctcgtccataccatgtaacccacataccacca 292
||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgtgctg-----aacagatttggcccccctcgtccataccatgtaacccacataccacca 492
Query: 293 ccatgccacacggtgtctaccaaacagggaatgcaggatatactctggataactgttctc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccatgccacacggtgtctaccaaacagggaatgcaggatatactctggataactgttctc 552
Query: 353 aaaacacacggtgactactcctccaaggtgtagatagtagacttactcaataccacaata 412
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 553 aaaacacacggtgacttctcctccaaggtgtagatagtagactcactcaataccacaata 612
Query: 413 ctaattacccaaaaaccacacataaaatgtcagtatttgaaaacacactggctcaagaca 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctaattacccaaaaaccacacataaaatgtcagtatttgaaaacacactggctcaagaca 672
Query: 473 gctttagcacaaaaagctatgtctttgattctccttccatagtatttgaactttatggat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gctttagcacaaaaagctatgtctttgattctccttccatagtatttgaactttatggat 732
Query: 533 acat 536
||||
Sbjct: 733 acat 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
