BAC Information

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BAC

Clone NameMSMg01-380M07
Chromosome4 (Build37)
Map Location 75,629,936 - 75,630,513
singlet/doubletsinglet
Overlap genePtprd
Upstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380M07.T7 (MSMg01no380_m07.b1)MSMg01-380M07.TJ (MSMg01no380_m07.g1)
ACCAG485066AG485067
length758800
length of high quality
(start - end)
577 (60 - 636)57 (113 - 169)
definitionCHROMAT_FILE: MSMg01no380_m07.b1 PHD_FILE: MSMg01no380_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:56 2005CHROMAT_FILE: MSMg01no380_m07.g1 PHD_FILE: MSMg01no380_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATTTCAAGAGGATCCGCGGAATTCCAAGGT
TTGCCTCCATTGCCTTTTTCTCAACTATGAGGTCACAGGAAGTCACCTCT
GATTAAACAAGCAACATGTAAGGGTTCAGATACAAAGCAAGTTGCAATAA
TGTTAAAATACTTTATACGTTTTCTACATTCACAAAATAAACAGGTGTTT
TTATTTCTATTATAGGTTGCAACTCAAAGGGGAAAAAAAGTATATAATAA
AGTTAGTTTTTCAAGGACAATACTAATAAGATAGGTTGAACACTTCCACA
TATCTCCTGTTTTTTTGTTAAACCGACACCATACCTGTCAAATTTACCAA
AGTACTAGTTGAAAGAAATCACAGTACTTAAGGAATGAAAAATAACTCAT
GGGAAAAGTCCACAAAAATTAGGCCAAAATAATTTTTAAAACCAAGGGAA
AAGATACGAGGTTGATGTCTTGCTGCAGTGGATGAAATATCTTTGTAGGC
TCACATTGTGTACATGTACATATGTGGTGTCAGTGCGGAGTAAGAGGGCC
CCTCATGCTCAAGTGAGCAATGGCGGCAATTTATCCCTATGTTGGTCTTC
CCTTTTGATTCATTCTCAATGTAACCTGCACAGATGTCTTCTGATTTCAC
AGGGNTAAGAGCTTATAATTTGCAGTATATAATACTTTAAAGTTTATGTT
TTTAGCCCTATACTATATGAATATTTTCTTATTCTTATCCCATATTACGA
TGCAATAA
AAGGCCTGAGCGGCGCCTGGTTTCATAXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCATGATAATTTCCATAATAGCTAAAATAGTTTACATTCA
AAACGTGGCGCCATTCTTGACAGAAATTGTGTTGAACACTATGCGTATTT
CTAGCCATGCGTCTCAGTGTGTAGGGGATACCTTGTTTCTCAATATTGTC
TAGTCAACTCATGTTTGTACGACTTACAGTATTTGAGAAATAATACGCGC
ATATGTGATGGCAAATATAGTGCGATCCTCATAAACATGATATATTTACA
TATAATGTTTTTTTATTATGTAACACATTTTGACCTGATTTTTTTGATTC
TCCTGCTTCAGTTTCCTAACAGTCTCAGTGTATTTACTTTTTTATTTGTC
TTCCCCTGCCCGTTTTCTATTGCACTTCATAAGTGTATTCCTCACATTAT
TCATTTAGACTTCCATTCTTATCATTATTTTCAATTCCATTATCATCTTG
TTTTTTGTTCTCTCTTCACTAATTTCTCTTTACAATTATCCCTCGTGTTT
CCGCTTCTATATCTTTTTCTCCTCGACATACGTCCTTTATCTCCTCTCCC
TTCCCGGATGATTCCCTTATTCTATTATCTTGTTTTTTTACTTTTTCCCC
TGTTTTACCTTCTTCTTGCTTTCCCCCCTCTCTTTCCATCTTTTCTCTCC
TTACCTGTTAATCTTCCCTCTGTTATATCTCCCCCTTTCTTCTTATACTA
CTCTCCTAATCATCCACACCTATTTTCTCCTCACCCTTTCTTACCTCTTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_m07.b1 MSMg01no380_m07.b1 CHROMAT_FILE:
MSMg01no380_m07.b1 PHD_FILE: MSMg01no380_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:56 2005
         (577 letters)



>mm_chr4_75629736_75630713
          Length = 978

 Score =  936 bits (484), Expect = 0.0
 Identities = 556/584 (95%), Gaps = 13/584 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcctttttctcaactatgaggtcacaggaagtcacctctgattaaacaagcaacatgt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ttgcctttttctcaactatgaggtcacaggaagtcacctctgactaaacaagcaacatgt 260

                                                                       
Query: 61  aagggttcagatacaaagcaagttgcaataatgttaaaatactttatacgttttctacat 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 aagggttcagatacaaagcaagttgcaataatgttaaaatactttatatgttttctacat 320

                                                                       
Query: 121 tcacaaaataaacaggtgtttttatttctattataggttgcaactcaaaggg-gaaaaaa 179
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||
Sbjct: 321 tcacaaaataaacaggtgtttttatttctattataagttgcaactcaaagggaaaaaaaa 380

                                                                       
Query: 180 agtatataataaagttagtttttcaaggacaatactaataagataggttgaacacttcca 239
           || | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 agcacataataaagttagtttttcaaggacaatactaataagataggttgaacactttca 440

                                                                       
Query: 240 catatctcctg----tttttttgttaaaccgacaccatacctgtcaaatttaccaaagta 295
           |||||||||||        |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 catatctcctgacca----tttgttaaaccgacaccacacctgtcaaatttaccaaagta 496

                                                                       
Query: 296 ctagttgaaagaaatcacagtacttaaggaatgaaaaataactcatgggaaaagtccaca 355
           |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 497 ctagttgaaagaaatcacagtacttaaggaataaaaaacaactcatgggaaaagtccaca 556

                                                                       
Query: 356 aaaattaggccaaaataatttttaaaaccaagggaaaagatacgaggttgatgtcttgct 415
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 557 aaaattaggccaaaataatttttaaaaccaaggaaaaagatacgacgttgatgtcttgct 616

                                                                       
Query: 416 gcagtggatgaaatatctttgtaggctcacattgtgtacatgtacatatgtggtgtcagt 475
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 617 gcagtggatgaaatatctttgtaggctcacattgtatacatgtacatatgtggtgttagt 676

                                                                       
Query: 476 gc-ggagtaagagggcccctcatgctcaagtgagcaatggcggcaatttatccctatgtt 534
           || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 677 gcagg-gtaagagggcccctcatgctcaaatgagcaatggcggcaatttatccctatgtt 735

                                                       
Query: 535 ggtcttcc-cttttgattcattctcaatgtaacctgcacagatg 577
           |||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 736 ggtcttcctcttt-gattcattctcaatgtaacctgcacagatg 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space:   548856
Effective search space used:   548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)