Query= MSMg01no380_m19.b1 MSMg01no380_m19.b1 CHROMAT_FILE:
MSMg01no380_m19.b1 PHD_FILE: MSMg01no380_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:58 2005
(485 letters)
>mm_chr4_70676532_70677416
Length = 885
Score = 878 bits (454), Expect = 0.0
Identities = 475/482 (98%)
Strand = Plus / Minus
Query: 4 ggaattctttaatgcatttagataataacttattttatcctaacatatttgtgtgacaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaattctttaatgcatttagataataacttattttatcctaacatatttgtgtgacaat 626
Query: 64 gcagtcatggcaccaaagtttgtaggtgatgttgacctctaaggctttctccatgcagcc 123
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 gcagtcatggcaccaaagtttgtaggtgatgttgacctctaaggctttcaccatgcagcc 566
Query: 124 tccttctgaggttccctgccttgctatgaatatatttctaagcagtagatatgtaagctg 183
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccttctgaggtttcctgccttgctatgaatatatttctaagcagtagatatgtaagctg 506
Query: 184 catgagtcttctagaactactcacagtttgcctgtgttacatttcttaggagatagggct 243
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catgagtcttctagaattactcacagtttgcctgtgttacatttcttaggagatagggct 446
Query: 244 tattttgcatattgacaactttcttaatattcactttctttcttatttattctcttcgtg 303
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 445 tattttgcatattgacaactttcttaatattcaatttctttcttatttattctctttgtg 386
Query: 304 gcctaaaatagttttgggacataacaatgataatttgggcaactaagaaagtagactatt 363
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 gcctaaaatagttttgggacataacaatgataatttggacaactaagaaagtagactatt 326
Query: 364 agtatataaaggtatgagaacttatgctatttttcatgtttctttggattctggttgtat 423
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 agtatataaaggtatgagaacttatgctatttttcatgtttcttgggattctggttgtat 266
Query: 424 ttattttcaaatccactttatgcatctaccttagaataaaagtgatcttttgttttctca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttattttcaaatccactttatgcatctaccttagaataaaagtgatcttttgttttctca 206
Query: 484 ta 485
||
Sbjct: 205 ta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_m19.g1 MSMg01no380_m19.g1 CHROMAT_FILE:
MSMg01no380_m19.g1 PHD_FILE: MSMg01no380_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:58 2005
(458 letters)
>mm_chr4_70487725_70488582
Length = 858
Score = 808 bits (418), Expect = 0.0
Identities = 440/456 (96%), Gaps = 14/456 (3%)
Strand = Plus / Plus
Query: 3 ctgagtgtccctttctttctttttactagcagaaattctacagcattctttattctgccc 62
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 203 ctgagtgtccctttctttctttttactagcagaaattctacagcatactttattctgccc 262
Query: 63 agccaatgactaccatttattgacaaggcagagaataaatggtaagaaatgtttaaacaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agccaatgactaccatttattgacaaggcagagaataaatggtaagaaatgtttaaacaa 322
Query: 123 agttgaggaaggagatttttggtaaaggcattacaatgctatgcctggattgaaacaaga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agttgaggaaggagatttttggtaaaggcattacaatgctatgcctggattgaaacaaga 382
Query: 183 tatgagggcagagaaatcaatattttaataatccaagggcaacaatacacagcatacaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatgagggcagagaaatcaatattttaataatccaagggcaacaatacacagcatacaga 442
Query: 243 atattatgcctacagaaaacagaaaaaaatcaacttaaaagtgataaagttcaagcaaat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atattatgcctacagaaaacagaaaaaaatcaacttaaaagtgataaagttcaagcaaat 502
Query: 303 tagaataagatatagatattagtaaaccataatttcttgatattggtttattgattggaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tagaataagatatagatattagtaaaccataatttcttgatattggtttattgattggaa 562
Query: 363 catatactatactaatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgcatgtg 422
||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 563 catatactaaactaatattgtgtgtgtgtgtgtgtg--------------catgcatgtg 608
Query: 423 tgtgtctttgtagtatatgtgagccaaagtataata 458
||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgtgtctttgtagtatatgtgagccaaagtataata 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
