BAC Information

Click to search

BAC

Clone NameMSMg01-380P13
Chromosome4 (Build37)
Map Location 76,720,285 - 76,886,922
singlet/doubletdoublet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380P13.T7 (MSMg01no380_p13.b1)MSMg01-380P13.TJ (MSMg01no380_p13.g1)
ACCAG485222AG485223
length734735
length of high quality
(start - end)
174 (67 - 240)497 (134 - 630)
definitionCHROMAT_FILE: MSMg01no380_p13.b1 PHD_FILE: MSMg01no380_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:13 2005CHROMAT_FILE: MSMg01no380_p13.g1 PHD_FILE: MSMg01no380_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,720,285 - 76,720,457)(76,886,429 - 76,886,922)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAGGATTTCCCTGACTGCGAAAAAGGTCCATGAATACAATTTGAAGTACT
CCATTTATGGAGAAGGAACTGCTGAGTGACTATATCCATAGTGTTCTGAA
ATCACACTTTGACCTTAAAAATAGTCTTCATTTTTCTGTTTGAGATATTG
ATCATGGAGGGTAAATGACAGAGTTGTTTAAAAAAAAAACCATATTAAGT
TGAAGGTACAATGGACAATGTTAAAACCCTCTTCAAATTTGTAACAATTA
TTTTCTGATCTTATTATTAGAAAGAAACCCTTGATGCAAAAATCATGTAC
AAGACCATTANACTTAGTTTACATAACCATTCAGAAATGGTGAAACATTT
TGGAATAAAAACAACAGCTGTCTAATTGGACTTAAAGTCCACTTAATTAG
AGGGCAATTATACCTGGTGTGGTCAACCTAGTCAACTACCCATAACTGGG
GAGGCCATGGAATCTAGAGAAGACCGCACTACTGACCCTTTCTCANACCA
GTATAATCTCTAACTGTATTTTCAGCCCTTACCTTTTTTCTACTGATAAA
TATAGCTCCCAATTCACAGCCAAGAATCTTCTTTTTGCAGTAGATGGAAA
ATATCACAGAATTCCATCACTGGTCAGGACTCACAGGACAACTGATTACT
GCATTCCTGACCAAAACTGTTATAAGCTCATCAT
ATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATGTTGAAAGGTCAGATGAAAATTAC
AGAGTGTAAAGGATTTGACAAANAGAAGATGAAAGCTATAAAAACTAGGC
AATATTATGGTGCTTAGAATTCTTCACAGTGAGAAAGGATTTGATTTAGT
TTTTTGTTCTATTTAGTATATAAAGACATTAATTCATATGGCTATAGCTT
ACACAGAAAATGATGTCATGAAAGATACATGCTCAGAGTGAGCATGGTTG
TCAACTTCTGTGACTACCTGCCCAGGTGGAATAACAGGTCAGTTAGGAGA
AACAAAAATGCTGGCATAGCAGTCTTAATTTGAAAGGCATAGAAAAAATA
CGATAATCCCAATTTTGTTTTTTTATGAAAATGTGTCTTTCATTCTCTGT
AACTTTGAATTATGGACCGTGCTACCATAGACGTATCTACACATTCATCA
CCCCCTGTGATGTGGGGTAACTAGGTAACATATACTGAATGGACTCAGGT
ATTTGTAATAATAGATTTATGACTCATGATCAAGTGGAATTTTTTTATAA
GAGTCACTCTAATGTCAAGGAATGCCAAACAAAGTTCATAATGGCAGCTC
TACATGCAGATGGCCAATTGTATATACTACTCTCTCTGGGTGCATACACA
TACACTCTAAATTTTACGTGTATGCACTCAATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_p13.b1 MSMg01no380_p13.b1 CHROMAT_FILE:
MSMg01no380_p13.b1 PHD_FILE: MSMg01no380_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:13 2005
         (174 letters)



>mm_chr4_76720085_76720658
          Length = 574

 Score =  335 bits (173), Expect = 1e-96
 Identities = 173/173 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcgaaaaaggtccatgaatacaatttgaagtactccatttatggagaaggaactgctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcgaaaaaggtccatgaatacaatttgaagtactccatttatggagaaggaactgctgag 260

                                                                       
Query: 61  tgactatatccatagtgttctgaaatcacactttgaccttaaaaatagtcttcatttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgactatatccatagtgttctgaaatcacactttgaccttaaaaatagtcttcatttttc 320

                                                                
Query: 121 tgtttgagatattgatcatggagggtaaatgacagagttgtttaaaaaaaaaa 173
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttgagatattgatcatggagggtaaatgacagagttgtttaaaaaaaaaa 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no380_p13.g1 MSMg01no380_p13.g1 CHROMAT_FILE:
MSMg01no380_p13.g1 PHD_FILE: MSMg01no380_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:13 2005
         (497 letters)



>mm_chr4_76886229_76887125
          Length = 897

 Score =  917 bits (474), Expect = 0.0
 Identities = 489/494 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctataaaaactaggcaatattatggtgcttagaattcttcacagtgagaaaggatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agctataaaaactaggcaatattatggtgcttagaattcttcacagtgagaaaggatttg 635

                                                                       
Query: 61  atttagttttttgttctatttagtatataaagacattaattcatatggctatagcttaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 atttagttttttgttctatttagtatataaagacattaattcatatggctatagcttaca 575

                                                                       
Query: 121 cagaaaatgatgtcatgaaagatacatgctcagagtgagcatggttgtcaacttctgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cagaaaatgatgtcatgaaagatacatgctcagagtgagcatggttgtcaacttctgtga 515

                                                                       
Query: 181 ctacctgcccaggtggaataacaggtcagttaggagaaacaaaaatgctggcatagcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctacctgcccaggtggaataacaggtcagttaggagaaacaaaaatgctggcatagcagt 455

                                                                       
Query: 241 cttaatttgaaaggcatagaaaaaatacgataatcccaattttgtttttttatgaaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cttaatttgaaaggcatagaaaaaatacgataatcccaattttgtttttttatgaaaatg 395

                                                                       
Query: 301 tgtctttcattctctgtaactttgaattatggaccgtgctaccatagacgtatctacaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 394 tgtctttcattctctgtaactttgaattatggaccgtgctaccatagacgtatatacaca 335

                                                                       
Query: 361 ttcatcaccccctgtgatgtggggtaactaggtaacatatactgaatggactcaggtatt 420
           |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 334 ttcatcactccctgtgatgtggggtaactaagtaacatatactgaatggacttaggtatt 275

                                                                       
Query: 421 tgtaataatagatttatgactcatgatcaagtggaatttttttataagagtcactctaat 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 274 tgtaataatagatttatgactcatgatcaagtgggatttttttataagagtcactctaat 215

                         
Query: 481 gtcaaggaatgcca 494
           ||||||||||||||
Sbjct: 214 gtcaaggaatgcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)