Query= MSMg01no381_a19.b1 MSMg01no381_a19.b1 CHROMAT_FILE:
MSMg01no381_a19.b1 PHD_FILE: MSMg01no381_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:19 2005
(550 letters)
>mm_chr4_151207777_151208727
Length = 951
Score = 1036 bits (536), Expect = 0.0
Identities = 542/544 (99%), Gaps = 1/544 (0%)
Strand = Plus / Minus
Query: 5 gaattcagttagttgactgaacatttttgtacattttcgaaagatttagttaaattacac 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gaattcagttagttgagtgaacatttttgtacattttcgaaagatttagttaaattacac 689
Query: 65 tatgaatctaacattatcatttagaaaatatttgaaggttgacta-aaaggctggttcat 123
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 688 tatgaatctaacattatcatttagaaaatatttgaaggttgactagaaaggctggttcat 629
Query: 124 tctctagaattatagctgtcggccaagcacaccatctgtcaatttcaggagccccactgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tctctagaattatagctgtcggccaagcacaccatctgtcaatttcaggagccccactgg 569
Query: 184 ttacatttttattgtgtgaagtaggttaggaaattatattgtgaagtcatgtatcacacg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ttacatttttattgtgtgaagtaggttaggaaattatattgtgaagtcatgtatcacacg 509
Query: 244 tttttgctagataacgataatgaagtgtgtgcctgtcgtgtagttgatattcccacttcg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tttttgctagataacgataatgaagtgtgtgcctgtcgtgtagttgatattcccacttcg 449
Query: 304 cagtgtcagagttgaactgtttggcttgaatatggagggacagttgaaaccggcttatac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cagtgtcagagttgaactgtttggcttgaatatggagggacagttgaaaccggcttatac 389
Query: 364 cttagttttactgttaagatactgtttgttagtgggagtttaaaactagcaatatgttct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cttagttttactgttaagatactgtttgttagtgggagtttaaaactagcaatatgttct 329
Query: 424 gttatttaatcatttacagctattgtaaaaacattaaacagtagcttttaattaagatta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gttatttaatcatttacagctattgtaaaaacattaaacagtagcttttaattaagatta 269
Query: 484 catttttatgtggtattactatgtgaacagttctgttccaatataaagaacagttttttt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 catttttatgtggtattactatgtgaacagttctgttccaatataaagaacagttttttt 209
Query: 544 tttt 547
||||
Sbjct: 208 tttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space: 508140
Effective search space used: 508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_a19.g1 MSMg01no381_a19.g1 CHROMAT_FILE:
MSMg01no381_a19.g1 PHD_FILE: MSMg01no381_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:20 2005
(453 letters)
>mm_chr4_151021824_151022676
Length = 853
Score = 845 bits (437), Expect = 0.0
Identities = 446/449 (99%)
Strand = Plus / Plus
Query: 1 catgagcattagagttgaaagagaaactctccgcttctcgctggctgccaacctacaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgagcattagagttgaaagagaaactctccgcttctcgctggctgccaacctacaaac 260
Query: 61 caacaaatgttctttagactcaagtatctgtcaggacttctgctcctggccaaaagagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacaaatgttctttagactcaagtatctgtcaggacttctgctcctggccaaaagagga 320
Query: 121 gccgagaagccgacaagtgcaaaacgtggcttctctagacatggaccgctggcacggaag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gccgagaagccgacaagtgcaaaacgtggcttctctagacatggaccgctggcatggaag 380
Query: 181 gaccgtgacctgtgagagatggtaaacacacaaggtgagctctgcagctttcttgggtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccgtgacctgtgagagatggtaaacacacaaggtgagctctgcagctttcttgggtga 440
Query: 241 cttgctatgaagtttccaggctgtggcagagaaaggggacccaggcctaggagtcccctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgctatgaagtttccaggctgtggcagagaaaggggacccaggcctaggagtcccctt 500
Query: 301 gaattgaggagaaggacgtcgaaatgggggtgaatcaagctcactggaggtctcaagaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaattgaggagaaggacgtcgaaatgggggtgaatcaagctcactggaggtctcaagaca 560
Query: 361 gagcactgggaaagatgctcagaggattcgggagccatgcagagggcacctccaactatt 420
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagcactgggaaagatactcagaggattcgggagccatgcagagggcacctccaactatt 620
Query: 421 catgcaaatacagattcacacatgtctct 449
|||||||||||||||||||||||||||||
Sbjct: 621 catgcaaatacagattcacacatgtctct 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
