Query= MSMg01no381_g03.b1 MSMg01no381_g03.b1 CHROMAT_FILE:
MSMg01no381_g03.b1 PHD_FILE: MSMg01no381_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:46 2005
(549 letters)
>mm_chr4_58884356_58885304
Length = 949
Score = 913 bits (472), Expect = 0.0
Identities = 478/480 (99%)
Strand = Plus / Minus
Query: 5 gggttagtcttccaatccttcctttatttctccatagcagtctcaatgatttgatctttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gggttagtcttccaatccttcctttatttctccatagcagtctcaatgatttgatctttt 421
Query: 65 ctttttgggaatgtaagtgatcattgacaaaagtgttttcaggagagagaaaaagaagca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctttttgggaatgtaagtgatcattgacaaaagtgttttcaggagagagaaaaagaagca 361
Query: 125 aatggggcattcttgccactcaaaatttagtgttctattcaatgagggttataattgatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aatggggcattcttgccactcaaaatttagtgttctattcaatgagggttataattgatt 301
Query: 185 agatttacttcatgcttatacaccttttacctcctccctcctccccttaagccatagtgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agatttacttcatgcttatacaccttttacctcctccctcctccccttaagccatagtgt 241
Query: 245 gaatctagaaaccactctaatgagtgtgacatgacctatggcaggcactatactgggtac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaatctagaaaccactctaatgagtgtgacatgacctatggcaggcactatactgggtac 181
Query: 305 ttttagtatactatctcatttaatcctcacagcaactaatgaggtagtgaaattttctaa 364
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 180 ttttagtatactatctcatttaatcctcacagcaactaatgaggtagcgaaattttctaa 121
Query: 365 agctcctttcctaaaaggtatggaagttttgagattcaccagggtctcttttctgatacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 agctcctttcctaaaaggtatggaagttttgagattcaccagggtctcttttctgatacc 61
Query: 425 ggactcttagcctagtcctttgtgaggcttaaagctgaatatactggagagtactagtta 484
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 ggactcttagcctagccctttgtgaggcttaaagctgaatatactggagagtactagtta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_g03.g1 MSMg01no381_g03.g1 CHROMAT_FILE:
MSMg01no381_g03.g1 PHD_FILE: MSMg01no381_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:46 2005
(520 letters)
>mm_chr4_58687484_58688403
Length = 920
Score = 969 bits (501), Expect = 0.0
Identities = 516/521 (99%), Gaps = 1/521 (0%)
Strand = Plus / Plus
Query: 1 aaagacagatcagcaaaaacagaaaaatcaaacacagagggaaaaaaaa-ctaactcaaa 59
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 200 aaagacagatcagcaaaaacagaaaaatcaaacacagagggaaaaaaaaactaactcaaa 259
Query: 60 tcaaatgactgagcagaagattgctaagatagcatctgtggttgacaatcaccaaacaag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcaaatgactgagcagaagattgctaagatagcatctgtggttgacaatcaccaaacaag 319
Query: 120 atgcacacaagaaatctctaccaaacatttaacaaaaagtgacacagtcaggcggagcaa 179
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 320 atgcacacaagaaatctgtaccaaacatttaacaaaaagtgacacagtcaggtggagcaa 379
Query: 180 tacatgcctgttattccaggatccaaaacgctgaagcaggaagataaagagtttgagact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tacatgcctgttattccaggatccaaaacgctgaagcaggaagataaagagtttgagact 439
Query: 240 agcctatagggcaccataaagagatcttgtcagggaaagaaggggagggaagaggaggag 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgcctatagggcaccataaagagatcttgtcagggaaagaaggggagggaagaggaggag 499
Query: 300 gtgacaagagaaataatgccagccctacatcaactctttcagaaaacagaacaaaggtgt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgacaagagaaataatgccagccctacatcaactctttcagaaaacagaacaaaggtgt 559
Query: 360 acagtgctactggttttttttaggttcataaccctgacaccaaaatataagtcactaaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acagtgctactggttttttttaggttcataaccctgacaccaaaatataagtcactaaag 619
Query: 420 gaaagattctgtcatgaacaacaacagtaacagtaacaaattcttgtggtgttaggcatg 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaaaaattctgtcatgaacaacaacagtaacagtaacaaattcttgtggtgttaggcatg 679
Query: 480 gtagcaattatctcaacctgatatgagtacctagcacacag 520
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtagcaattatctcaacctgatatgagtacctagcacacag 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
