BAC Information

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BAC

Clone NameMSMg01-381M08
Chromosome4 (Build37)
Map Location 127,619,972 - 127,620,347
singlet/doubletsinglet
Overlap geneLOC635169
Upstream geneSfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
Downstream gene4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381M08.T7 (MSMg01no381_m08.b1)MSMg01-381M08.TJ (MSMg01no381_m08.g1)
ACCAG485833AG485834
length828763
length of high quality
(start - end)		57 (66 - 122)471 (74 - 544)
definitionCHROMAT_FILE: MSMg01no381_m08.b1 PHD_FILE: MSMg01no381_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:17 2005CHROMAT_FILE: MSMg01no381_m08.g1 PHD_FILE: MSMg01no381_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTATACGACTCCTATTCCAAAAGGACCGCGGAATCAGATAATG
CACTCATTCCTCAAGGATTTTTTGGCTGTTGGTGTTTGTTTGTTTGTTTG
TTTGTTTGTTTTTTGTTTTGATTTGTTTTGTTTCTTGGCTTTCAAGACAC
GCCCCCTTGGAGCAAACCTGACTGTCCCGCAACTCATCCTGAATAACACG
CCGACCTCTAACTCATAAATCTGCCCGCCTCTGCCTTTCAAGTGCCGCTA
CTAAATGCACGTACCACCCCCGCCTGTTCAATGAACCGCTCACACCATTC
TAATATTTTTTTCACAACAGCCATAATGCCATACACATGCACCCGTTTGC
CCACTCATTCCGCACCCCCCCCCCACCCCTTAACCCCCCCCCCCTTTATT
TCCCCAACCTCCCCCCCACCCCTTCCCCCCCCCCAAACTATTCTTTCCCA
CCCCCCCTCCTACCATCCCCCCTTTCATCTCTCTCCCCCCCCTCCCCCTC
CCCCCCCCCCCTATTCTTTTCAAATCCCCCCCTTTTTCCTTCCCCTCCCT
CCAAAATTTCCAACCCCCTCACCCCCCATATATCCCCCCAAACCTTTTCC
CCACCCTTCACACCCTCTTCCCCTAATATCTCACCAAAAACCCTAATCTC
CCCTTCCATTTTTCTCCCCCCCCACCTCTCACTTTCTCTTCCCTCGCCCT
CTATCCCCATACACCATATACACACAACCACCCAATTTTCCTCTATTCCC
CTCACCCACCCCTTCTTTTTTCCACCACACCCTCCCTCAAACCTCTAATT
CTCTTACCATTCTCCCCCATTCTCCTCG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGCAGTGAATGGCTTCGTTGAAGTTG
ACCATGAAGGAGCTGACCCTCCCAGGTGATGACTAAAGACAGAGTTTCCA
TCTTCTCATGGCTTCTCAGAATCTCCCAGTGCTCACTATGAGACAACTGA
CCAGGAGGCCTGATACAGTAGAAAGAAGGCACAGAAGATTGGTGAAAGAG
CTCTGTAGCATCTGCACTGCGTGGCCTTGGGCAAGTTCCTTAACTGTCCC
AGTTTGTCTGTAGAAGAGCTGGGCTTATCATAATTACAGCAGCAGCAGAA
ACTGATTGTGTTGTAAGGATTAATTGAGCCCACATACGGGGAAGGACTCT
TAAAATCCCCAGTGTGACACAGATGTTCATTTCATTAATATTCAGTTATG
GCCCTCCAAGAAAAGGGGGTCAGGGAGTTCAGTAGACCTTGAGGGGGCAA
AGAGAACTGGGGACTAGTCTTTCATGGTCTCTTCCACACTCGACCTAAGG
AATAATGATGAGGCTCCCAATCTAATTTACTCAGAGCTCCGGGGTGGAGA
GACTCATAAATGGGAAGAGAAGATCTCCCCCTAAAGCATGAACACCTCTC
GATGAAAAAGGGGGAACTGCGTTGTGAAAAGGACACCCCCTCCCTCCAAA
AATAAGGACGGTTTTTTCTCCCCTTCTCTCTTGATTTTAAACAGCCGGGA
TTTTTATACTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_m08.g1 MSMg01no381_m08.g1 CHROMAT_FILE:
MSMg01no381_m08.g1 PHD_FILE: MSMg01no381_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:17 2005
         (471 letters)



>mm_chr4_127619972_127620842
          Length = 871

 Score =  696 bits (360), Expect = 0.0
 Identities = 372/376 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcagtgaatggcttcgttgaagttgaccatgaaggagctgaccctcccaggtgatgac 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aggcagtgaatggctttgttgaagttgaccatgaaggagctgaccctcccaggtgatgac 317

                                                                       
Query: 61  taaagacagagtttccatcttctcatggcttctcagaatctcccagtgctcactatgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 taaagacagagtttccatcttctcatggcttctcagaatctcccagtgctcactatgaga 257

                                                                       
Query: 121 caactgaccaggaggcctgatacagtagaaagaaggcacagaagattggtgaaagagctc 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 256 caactgaccaggaggcctgatacagtagaaagaaggcacggaagattggtgaaagagctc 197

                                                                       
Query: 181 tgtagcatctgcactgcgtggccttgggcaagttccttaactgtcccagtttgtctgtag 240
           |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 196 tgtagcatctgcactgcgtggccttgggcaagttccttaaatgtccccgtttgtctgtag 137

                                                                       
Query: 241 aagagctgggcttatcataattacagcagcagcagaaactgattgtgttgtaaggattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 aagagctgggcttatcataattacagcagcagcagaaactgattgtgttgtaaggattaa 77

                                                                       
Query: 301 ttgagcccacatacggggaaggactcttaaaatccccagtgtgacacagatgttcatttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  ttgagcccacatacggggaaggactcttaaaatccccagtgtgacacagatgttcatttc 17

                           
Query: 361 attaatattcagttat 376
           ||||||||||||||||
Sbjct: 16  attaatattcagttat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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