Query= MSMg01no381_o14.b1 MSMg01no381_o14.b1 CHROMAT_FILE:
MSMg01no381_o14.b1 PHD_FILE: MSMg01no381_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:28 2005
(242 letters)
>mm_chr4_35927110_35927748
Length = 639
Score = 402 bits (208), Expect = e-117
Identities = 233/242 (96%), Gaps = 5/242 (2%)
Strand = Plus / Minus
Query: 2 ttctttaggacca-ttttttatgatcacttgctatagcagacaagtacccaagtttcttt 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttctttaggaccatttttttatgatcacttgctatagcagacaagtacccaagtttcttt 380
Query: 61 tgtcatactacttactcttgtttactagaatgtgaacagtaaatctactaggaagacaag 120
| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 379 tctcagactacttactcttgtttactagaatgtgaacagtaaacctactaggaagacaag 320
Query: 121 tattattcccatgaaatgatttccagtaataactttgttgctaaatacagtgcaaatgtt 180
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 319 tattattcccatgaaatgatttccagtaatcact--gttgctaaatacagtgcaaatgtt 262
Query: 181 tcctttcctgcttagaaccttcaactttcaatattttattgttccttgcaaggctccaag 240
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tcctttcctgcttaga-ccttcaactt-caatattttattgttccttgcaaggctccaag 204
Query: 241 ag 242
||
Sbjct: 203 ag 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 639
Length adjustment: 9
Effective length of query: 233
Effective length of database: 630
Effective search space: 146790
Effective search space used: 146790
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no381_o14.g1 MSMg01no381_o14.g1 CHROMAT_FILE:
MSMg01no381_o14.g1 PHD_FILE: MSMg01no381_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:28 2005
(604 letters)
>mm_chr4_35757503_35758505
Length = 1003
Score = 1075 bits (556), Expect = 0.0
Identities = 592/604 (98%), Gaps = 1/604 (0%)
Strand = Plus / Plus
Query: 1 agtcttccactagcagcctttggatgaagacatagaactctcagctcctcctgcaccatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcttccactagcagcctttggatgaagacatagaactctcagctcctcctgcaccatg 260
Query: 61 ctttcctggatactgccctgctctctctttgatgataatggactgaacctcggaacctgt 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgcctggatactgccctgctctctctttgatgataatggactgaacctcggaacctgt 320
Query: 121 aaaccagccccaattaaatgttttttataatacttgccttggtcatggtgtctgttcaca 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagccagccccaattaaatgttttttataatacttgccttggtcatggtgtctgttcaca 380
Query: 181 gcagtaaaaccctaactaagacgcatgtattcaattcagacctaattaagtccactattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtaaaaccctaactaagacgcatgtattcaattcagacctaattaagtccactattc 440
Query: 241 tgtaatttatcttatataaattgttatttgaaatattcaaaaacatgaattgtatcatat 300
||||||||| | |||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 441 tgtaatttaac-aatataaattgttatttgaaatattaaaaaacatgatttgtatcatat 499
Query: 301 atctaatttatcattctgatactagaagtttagattttaatgacatgaaggtaaaaatgg 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 500 atctaatttatcattctgatactagaagtttagattttaatgacatgaagttaaaaatgg 559
Query: 361 gaataagtaacaatttttttactattaaggatgatattaattttacgttatcattaatcc 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 560 gaataagtaacaatttttttactattaaggatgatattaattttactttatcattaatcc 619
Query: 421 actttttaaagaaagctttatcaaacttaaaaacaaaataatgactttctgttgttttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 620 actttttaaagaaagctttatcaaacttaaaaacaaaataatgactttctgatgttttca 679
Query: 481 ttttagaaatccactaatgaccttcttatttagaactacatttaagaccagaggtgtgat 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 680 ttttagaaatccactaatgaccttctcatttagaactacatttaagaccagagctgtgat 739
Query: 541 gtatagagatcataccaagaggcagatatggtaggaccattttgtaatcaaagcactgat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtatagagatcataccaagaggcagatatggtaggaccattttgtaatcaaagcactgat 799
Query: 601 aagg 604
||||
Sbjct: 800 aagg 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1003
Length adjustment: 10
Effective length of query: 594
Effective length of database: 993
Effective search space: 589842
Effective search space used: 589842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
