BAC Information

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BAC

Clone NameMSMg01-382B21
Chromosome4 (Build37)
Map Location 52,358,397 - 52,534,953
singlet/doubletdoublet
Overlap geneLOC666724, Smc2, LOC100040883
Upstream geneLOC384015, LOC100041026, LOC100041038
Downstream gene4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382B21.T7 (MSMg01no382_b21.b1)MSMg01-382B21.TJ (MSMg01no382_b21.g1)
ACCAG486097AG486098
length760754
length of high quality
(start - end)		448 (35 - 482)412 (62 - 473)
definitionCHROMAT_FILE: MSMg01no382_b21.b1 PHD_FILE: MSMg01no382_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:45 2005CHROMAT_FILE: MSMg01no382_b21.g1 PHD_FILE: MSMg01no382_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,358,397 - 52,358,840)(52,534,542 - 52,534,953)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATAAT
ACTTATGTCAAAGTCACATTTTTAAGCACGTGAAACATGCAAAATTTTGT
ACTAGACAAAGATTAATGAGGCATGGCCTTTTCCATAAAGGTGCATACAA
AACTGAATGGAAACAAAATCAATCATAGATACCAAAAGCAGAAATGGAGT
ATGTGCATACAAACATGTGAACCATGATCCCATTTTATACCGTTTATTCC
CTTATTTATTGTTGAGAATGCTTAAGACGTTAAAACTGCATCTATATCAA
ATCTAAAGGTATTTGGAGGAAAAGGTATTTTAATTATATAGTATACAAAT
GCACATGTTTGAATTCTAAATATCTTAATCAAGGTTTCTATTGCCATGAC
AAAATATACTGATCAAAAGCAACTAGGGAAGGAAAGGGTTCATCGCAGCT
TCCAACTAGCCCTTCAGACTCCATCAATGAAAGGGGTGTCAGATTATGAA
CTCAGGGCAGGAACTAAAGCCGAACCCATGAGGAAGTTCCTTAGGGTTTT
CTCACCCCATTTCCTTGAAGCCTCAGAACCACCTTTCCCGGGAAAAAGCC
CACCCCCAGGGACTGGGGCCTCCCCCATCCCTTGGGAAAAAAAAAAAAGC
CCTAATTGTTTGGCAAAACCCTGATTTTTAAAGGAATTTTCTCCCTTGGA
TTTCTTCCCCCCAAGGGCAACTTATTGTTCTTCTCTTATATAAAAAACAA
TCTTTGTCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXATTACAATAAATGAGACTTTCTTCATGCAGTAATTAGAG
AATTTGACAATGCTTCCCTGTTATTTGACAATTGCTGGCATTTCTGTGAT
AAAAATAACTATCATATTTTGAGAATATTTTAATAATAGAAAAAATACAA
GATTGAGGCATAGATGTATCAACTATTTTGCCGAAAGTTAACTATTTTCT
CTATTACTTGAAGCTGTAGAGATATTCTTTTCTTTCCTTACCTTAGTGAA
GGTAGAACACACTGCCAAAGCTGATTACTTTTAATTTGAAGATATTTTGC
TAATTGTTTTTACTGGGTAAACAGTCAAAATTTTTGACCAGACAGAATCA
ATTTGTACAATGTTCTACCATGCATAGGCCCTGGGTTCCATTCCCCAACA
CCACAAAATGTTAAGTTTGGTGGTGTGCATCTTTAATCCCAGGACTTGGG
AGGTGAAACCATAATGTCAAGTCATTTTTAGATTCTTAAGAAGTTTAGAA
TACTCTGAAAACATGTGACTCCCGGCCCCAAAAATTTTTTTTTAAAGCAA
CTATGGCCCCCTCCAAAAAAATACTTTTTAAAAAATTTTTTAGGGGATCC
CTATTAAAAGGGGTGCATTTATGTTTCTCGCTAAGCCAATCGACTTTTCT
TTCTTAAAGCCCCATTTATTTCGTGGGGTGGGGGATTTTCTTCTCTTCTA
AAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_b21.b1 MSMg01no382_b21.b1 CHROMAT_FILE:
MSMg01no382_b21.b1 PHD_FILE: MSMg01no382_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:45 2005
         (448 letters)



>mm_chr4_52358193_52359040
          Length = 848

 Score =  835 bits (432), Expect = 0.0
 Identities = 441/444 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaataatacttatgtcaaagtcacatttttaagcacgtgaaacatgcaaaatttt 64
           ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaataatacaaatgtcaaagtcacctttttaagcacgtgaaacatgcaaaatttt 264

                                                                       
Query: 65  gtactagacaaagattaatgaggcatggccttttccataaaggtgcatacaaaactgaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtactagacaaagattaatgaggcatggccttttccataaaggtgcatacaaaactgaat 324

                                                                       
Query: 125 ggaaacaaaatcaatcatagataccaaaagcagaaatggagtatgtgcatacaaacatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggaaacaaaatcaatcatagataccaaaagcagaaatggagtatgtgcatacaaacatgt 384

                                                                       
Query: 185 gaaccatgatcccattttataccgtttattcccttatttattgttgagaatgcttaagac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaccatgatcccattttataccgtttattcccttatttattgttgagaatgcttaagac 444

                                                                       
Query: 245 gttaaaactgcatctatatcaaatctaaaggtatttggaggaaaaggtattttaattata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttaaaactgcatctatatcaaatctaaaggtatttggaggaaaaggtattttaattata 504

                                                                       
Query: 305 tagtatacaaatgcacatgtttgaattctaaatatcttaatcaaggtttctattgccatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagtatacaaatgcacatgtttgaattctaaatatcttaatcaaggtttctattgccatg 564

                                                                       
Query: 365 acaaaatatactgatcaaaagcaactagggaaggaaagggttcatcgcagcttccaacta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaaaatatactgatcaaaagcaactagggaaggaaagggttcatcgcagcttccaacta 624

                                   
Query: 425 gcccttcagactccatcaatgaaa 448
           ||||||||||||||||||||||||
Sbjct: 625 gcccttcagactccatcaatgaaa 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_b21.g1 MSMg01no382_b21.g1 CHROMAT_FILE:
MSMg01no382_b21.g1 PHD_FILE: MSMg01no382_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:45 2005
         (412 letters)



>mm_chr4_52534418_52535229
          Length = 812

 Score =  758 bits (392), Expect = 0.0
 Identities = 407/412 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacaataaatgagactttcttcatgcagtaattagagaatttgacaatgcttccctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 attacaataaatgagactttcttcatgcagtaattagagaatttgacaatgcttccctgt 477

                                                                       
Query: 61  tatttgacaattgctggcatttctgtgataaaaataactatcatattttgagaatatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tatttgacaattgctggcatttctgtgataaaaataactatcatattttgagaatatttt 417

                                                                       
Query: 121 aataatagaaaaaatacaagattgaggcatagatgtatcaactattttgccgaaagttaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 416 aataatagaaaaaatacaagattgaggcatagatgtatcaactattttgctgaaagttaa 357

                                                                       
Query: 181 ctattttctctattacttgaagctgtagagatattcttttctttccttaccttagtgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctattttctctattacttgaagctgtagagatattcttttctttccttaccttagtgaag 297

                                                                       
Query: 241 gtagaacacactgccaaagctgattacttttaatttgaagatattttgctaattgttttt 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 296 gtagaacacactgccaaagctgattacttttaatttgaagatgttttgctaattgttttt 237

                                                                       
Query: 301 actgggtaaacagtcaaaatttttgaccagacagaatcaatttgtacaatgttctaccat 360
           |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 236 actgggtaaagagtcaaaatttttgaccagacagaatcaatttgtataatgttctaccat 177

                                                               
Query: 361 gcataggccctgggttccattccccaacaccacaaaatgttaagtttggtgg 412
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gcataggccctggattccattccccaacaccacaaaatgttaagtttggtgg 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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