Query= MSMg01no382_c22.b1 MSMg01no382_c22.b1 CHROMAT_FILE:
MSMg01no382_c22.b1 PHD_FILE: MSMg01no382_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:51 2005
(554 letters)
>mm_chr4_103313787_103314740
Length = 954
Score = 1050 bits (543), Expect = 0.0
Identities = 549/551 (99%)
Strand = Plus / Plus
Query: 4 ggaattcagatctcatggaggttggcaggtgggcaagttagcctagtgagaatcagtgaa 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagatctcagggaggttggcaggtgggcaagttagcctagtgagaatcagtgaa 263
Query: 64 ctctgatctaggagcagttaggtcttcgctcccagctcaggtcctcccctgagtcagggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctctgatctaggagcagttaggtcttcgctcccagctcaggtcctcccctgagtcagggg 323
Query: 124 acactgttgacccttttgaaggttttatatcccatgttaaccaggtacccactgtaccag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acactgttgacccttttgaaggttttatatcccatgttaaccaggtacccactgtaccag 383
Query: 184 agtggttaaaatcaaactttagcatgactcccttacagtatcactttttgcctagctagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtggttaaaatcaaactttagcatgactcccttacagtatcactttttgcctagctagc 443
Query: 244 tccgatctgctcctttaggggtcacatgaaagtttaggggccagacctcgcctcatcacc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tccgatctgctcctttaggggtcacatgaaagtttaggggccagacctcgcctcatcacc 503
Query: 304 catgttcaccatgttttctgaccccttctctggccatcttttgagattcagcactcatgt 363
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 504 catgttcaccatgttttctgactccttctctggccatcttttgagattcagcactcatgt 563
Query: 364 ccctttggctggttctcttccctgttgccccctgcttataaagacacctaatctttatgc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccctttggctggttctcttccctgttgccccctgcttataaagacacctaatctttatgc 623
Query: 424 cccatcaccaccaatggtcctccttatcactaagcacaatttctgtaaagccaccaaccc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cccatcaccaccaatggtcctccttatcactaagcacaatttctgtaaagccaccaaccc 683
Query: 484 aggtcccagagccctacctcccagatggtctctagatgctcgtggatgggctaaacattg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aggtcccagagccctacctcccagatggtctctagatgctcgtggatgggctaaacattg 743
Query: 544 cctgttctcag 554
|||||||||||
Sbjct: 744 cctgttctcag 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_c22.g1 MSMg01no382_c22.g1 CHROMAT_FILE:
MSMg01no382_c22.g1 PHD_FILE: MSMg01no382_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:51 2005
(459 letters)
>mm_chr4_103479655_103480513
Length = 859
Score = 837 bits (433), Expect = 0.0
Identities = 449/459 (97%), Gaps = 8/459 (1%)
Strand = Plus / Minus
Query: 1 accagctctcagaagggtgatgaggctcaaattagccagtgctttgtaagctgccaagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 accagctctcagaagggtgatgaggctcaaattagccagtgctttgtaagctgccaagca 495
Query: 61 ttatacaaatataaaggattgttctgagtgggttcgatttaagtgaggtcaccctcgaca 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 494 ttatacaaatataaaggattgttctgagtgggttcaatttaagtgaggtcaccctcgaca 435
Query: 121 gcatcaaggccaagtaaaatgaactcttattctctcacagcagaaagagatcaagataag 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gcatcaaggccaagtacaatgaactcttattctctcacagcagaaagagatcaagataag 375
Query: 181 gaccagacctcaagaggtccacggctaggtagtccttatcccagcaagcaaagaggagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gaccagacctcaagaggtccacggctaggtagtccttatcccagcaagcaaagaggagct 315
Query: 241 ggtgattctgagctaattcaaagcagcctctgtgggatggctcagtgaagcttctgttcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggtgattctgagctaattcaaagcagcctctgtgggatggctcagtgaagcttctgttcg 255
Query: 301 gaaaagaagtacttacaatatagttcagtggaaagatcaaaatatggttagagtcacaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gaaaagaagtacttacaatatagttcagtggaaagatcaaaatatggttagagt------ 201
Query: 361 cacacacacacacacacacacacacacacacacacacacacacacactgagaaagagaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 --cacacacacacacacacacacacacacacacacacacacacacactgagaaagagaaa 143
Query: 421 aaaaggtaagtaaaagagaaaaaaaagacttctgatgtc 459
|||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aaaaggtaagtaaaagagaaaaaaaagacttctgatgtc 104
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 22
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
