BAC Information

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BAC

Clone NameMSMg01-382E18
Chromosome4 (Build37)
Map Location 101,694,696 - 101,695,172
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039747, Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot, Lepr, B020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536
Downstream geneLOC433739, Pde4b, Sgip1, Tctex1d1, Insl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382E18.T7 (MSMg01no382_e18.b1)MSMg01-382E18.TJ (MSMg01no382_e18.g1)
ACCAG486233AG486234
length752769
length of high quality
(start - end)
568 (32 - 599)477 (56 - 532)
definitionCHROMAT_FILE: MSMg01no382_e18.b1 PHD_FILE: MSMg01no382_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:00 2005CHROMAT_FILE: MSMg01no382_e18.g1 PHD_FILE: MSMg01no382_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTACTTACT
CTGGCCTTTGTTGTGTAAACCTTGCTCCCCAATTAAAAGTTAGGTTAATA
AAAGGCTAGCACCCGTGACTGGGCAGTAGAGAGAGAAAGGTGGTACTTGA
GGATCTAGTGAAGAGTCTCAGAAAAAAACCACAGGGGAGGAGAAAGGAGA
TGGAGAGAGGAGGAGGCCAGCACAAGGCAAGATGGATCATGAAGAGCATG
TAGGCATATGCTGATCCTGAGGACAGGCTACTGGAATGGAATCAGCCCAG
GTGAGACTCAAACATCAAGAAGTCAGGGACGTATGGCTGGGATGTAAGTG
AGAACAGCTCAGATCCTGCCCAATCGAGACTTAAGCTTATAAATAAAATA
CCAGGATTTTGTGTCTTTTATATAGGCTAGCTAGAATATATTATTCATTT
ACAGATATCCTTCAGCAAGTCTCCTCCTAAAGAGTCCACATCCTTCTCAA
AGAGCACCATCAGCTGGGAAACACAGGAGCCCATGTGGGACTTTCCCCAT
CCAAACCACAGGCTTTCTCCATGATAAATAACACATTGCATCCCAGACCT
TTGGCCAGCCACCCCAGCTCTCATCCAGATGAGTTATAGGTGAGTTAATT
TTTCATATTTATCTTTATTCCTTCCCCTGGCCTTGGCTCTATATAACATG
CATTGGCCCCTCTTTATGACTGATTTATCATCCTGGGAAGGAATTCCAGG
TC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXATGCCTTCTTACATCCCTTCTGAAGAATAGCTCAATGAACCACAT
CATTTGGGCTTTTACAGTCTATGTTCTTCAGCTCCTTAAATGTCTTTTAG
AAATGTTCCCGCTGGGCAGTGGTGGCGCATGCCTTTAATCCCAGTACTTG
GGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAA
AGTGAGTTCCAGGACAGCCAGGGCTACACAGAAAAACCCTGTCTTGGAAC
CCACACCCCCTGTCCCCCCAAAAAAGAAAAAAGAAATGTTCCCTAACAAA
TGGATCCACAATTCAGGCTTTGCTAAGTCACCATTGGCTTAGTCTTATAG
AACTTTATGAAATTCTTTAAAATTAAGATATGACTTTACATTTAGAATAT
AGAAATATAGAGAGTGTTTAAAGGAACACAGATACTGAAGGCCAGGTCGA
GGTAAATTCCCTCTTTATTTTAAACTTTATATAAGAAGGTGAATTTTAAA
TTTTCCTTATCTATTTAATTTCCTGTGNGNATGAGTGCATGCACGATTGT
GGGNGTATGTGTGTNGTTGAATCTGNGNAAGNGNGNGGANGCAGGGTTGT
TATGTGGAAAAATTGTCGTTTGTAAGNNAATACNNAATATACCACCATAT
TCTAATATCTTTACTTTTATTAGATATCATTTTTTGCACTTTTTGTTTTT
ATTTATTTCAATATAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_e18.g1 MSMg01no382_e18.g1 CHROMAT_FILE:
MSMg01no382_e18.g1 PHD_FILE: MSMg01no382_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:00 2005
         (477 letters)



>mm_chr4_101694496_101695372
          Length = 877

 Score =  907 bits (469), Expect = 0.0
 Identities = 475/477 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccttcttacatcccttctgaagaatagctcaatgaaccacatcatttgggcttttac 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 atgccttcttacatcccttctgaagaatagctcaacgaaccacatcatttgggcttttac 260

                                                                       
Query: 61  agtctatgttcttcagctccttaaatgtcttttagaaatgttcccgctgggcagtggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtctatgttcttcagctccttaaatgtcttttagaaatgttcccgctgggcagtggtgg 320

                                                                       
Query: 121 cgcatgcctttaatcccagtacttgggaggcagaggcaggcggatttctgagttcaaggc 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcatgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcaaggc 380

                                                                       
Query: 181 cagcctggtctacaaagtgagttccaggacagccagggctacacagaaaaaccctgtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcctggtctacaaagtgagttccaggacagccagggctacacagaaaaaccctgtctt 440

                                                                       
Query: 241 ggaacccacaccccctgtccccccaaaaaagaaaaaagaaatgttccctaacaaatggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaacccacaccccctgtccccccaaaaaagaaaaaagaaatgttccctaacaaatggat 500

                                                                       
Query: 301 ccacaattcaggctttgctaagtcaccattggcttagtcttatagaactttatgaaattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacaattcaggctttgctaagtcaccattggcttagtcttatagaactttatgaaattc 560

                                                                       
Query: 361 tttaaaattaagatatgactttacatttagaatatagaaatatagagagtgtttaaagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaaaattaagatatgactttacatttagaatatagaaatatagagagtgtttaaagga 620

                                                                    
Query: 421 acacagatactgaaggccaggtcgaggtaaattccctctttattttaaactttatat 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacagatactgaaggccaggtcgaggtaaattccctctttattttaaactttatat 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)