BAC Information

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BAC

Clone NameMSMg01-382F01
Chromosome4 (Build37)
Map Location 14,757,398 - 14,757,874
singlet/doubletsinglet
Overlap genenone
Upstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b
Downstream geneLOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64, LOC100040095, LOC633695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382F01.T7 (MSMg01no382_f01.b1)MSMg01-382F01.TJ (MSMg01no382_f01.g1)
ACCAG486247AG486248
length731749
length of high quality
(start - end)		480 (36 - 515)567 (61 - 627)
definitionCHROMAT_FILE: MSMg01no382_f01.b1 PHD_FILE: MSMg01no382_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:01 2005CHROMAT_FILE: MSMg01no382_f01.g1 PHD_FILE: MSMg01no382_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGACT
CATCTCAAAATCTCCCAAGATCTTGGGTTTCTTTTTAAATCTTGGTTTTA
CAACAATCCTTTTTTTTTTCCTAAGTGTTATAGTACAGATGAAAGACACC
AACAAGCCTTGAAATAGCAGGGTTTTGCTATTCATTATCTGGTGCTAAGC
CAATTAACATTCTGAGCCTCATTTTCGTGGCTAGTGGTTACAGAGTATAG
ATCCTTGTCATTACTTTACTTTCAAGCTTTGTACTAATTGGAAGCATCAT
CCACATGTGATCCTGAAAGAAAACAATCCTAGGTTTAATTCAAACAATAC
CTGCATCTTAACAATAATTTCTTGCTGATTGACTTCATGCTAATACAAAG
GTGGCACCATCTTTAGGAGAGATCACTAGAGAATATTAACAACCTCACTG
TATTACTGCAGCTTATATTCTAACTACTGGAAATGTTTCTATTTATCCAC
ATAGGACAAATGAAGTGATTAGTCATAAATATAATCTATCAATAAAAGCA
TACACATATTTACCCNCCAGCCTTCATATAATAGAGTTGACCTGCTGAGC
CATCGAACCATCCTCGGNTTGTTCTTAATGAGATATTTCTCATGTTCTCA
TGACCATGTCCACAATCCACTTAATTTGATCCAGGTACTAATCATTGTGT
AATCCAAAATATTAGTTTAATTTCAATGCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTGGACATAGTACTACCGGAGGATCGAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCT
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAAGGGAATTTATGAAATTCCTA
CGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTC
CCGAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTACCCCC
AAACCTAGGATATCCTAGACATAAGATATAATTTGCTAAACACATGAAAT
TCACGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_f01.b1 MSMg01no382_f01.b1 CHROMAT_FILE:
MSMg01no382_f01.b1 PHD_FILE: MSMg01no382_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:01 2005
         (480 letters)



>mm_chr4_14757194_14758075
          Length = 882

 Score =  882 bits (456), Expect = 0.0
 Identities = 472/478 (98%), Gaps = 4/478 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgactcat--ctcaaaatctcccaagatcttgggtttctttttaaatcttggtt 62
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaattctgactcatcacttaaaatctcccaagatcttgggtttctttttaaatcttggtt 622

                                                                       
Query: 63  ttacaacaatccttttttttttcctaagtgttatagtacagatgaaagacaccaacaagc 122
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttacaacaatcc-cttttttttcctaagtgttatagtacagatgaaagacaccaacaagc 563

                                                                       
Query: 123 cttgaaatagcagggttttgctattcattatctggtgctaagccaattaacattctgagc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cttgaaatagcagggttttgctattcattatctggtgctaagccaattaacattctgagc 503

                                                                       
Query: 183 ctcattttcgtggctagtggttacagagtatagatccttgtcattactttactttcaagc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctcattttcgtggctagtggttacagagtatagatccttgtcattactttactttcaagc 443

                                                                       
Query: 243 tttgtactaattggaagcatcatccacatgtgatcctgaaagaaaacaatcctaggttta 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tttgtactaattggaagcatcatccacatgtgatcctgaaagaaaacaatcctaggttta 383

                                                                       
Query: 303 attcaaacaatacctgcatcttaacaataatttcttgctgattgacttcatgctaataca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attcaaacaatacctgcatcttaacaataatttcttgctgattgacttcatgctaataca 323

                                                                       
Query: 363 aaggtggcaccatctttaggagagatcactagagaatattaacaa-cctcactgtattac 421
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 322 aaggtggcaccatctttaggagagatcactagagaatattaacaaccctcactgtattac 263

                                                                     
Query: 422 tgcagcttatattctaactactggaaatgtttctatttatccacataggacaaatgaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgcagcttatattctaactactggaaatgtttctatttatccacataggacaaatgaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 882
Length adjustment: 10
Effective length of query: 470
Effective length of database: 872
Effective search space:   409840
Effective search space used:   409840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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