BAC Information

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BAC

Clone NameMSMg01-382F15
Chromosome4 (Build37)
Map Location 116,377,501 - 116,378,034
singlet/doubletsinglet
Overlap geneMmachc
Upstream gene4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1
Downstream gene0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382F15.T7 (MSMg01no382_f15.b1)MSMg01-382F15.TJ (MSMg01no382_f15.g1)
ACCAG486275AG486276
length757773
length of high quality
(start - end)		526 (30 - 555)533 (57 - 589)
definitionCHROMAT_FILE: MSMg01no382_f15.b1 PHD_FILE: MSMg01no382_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:04 2005CHROMAT_FILE: MSMg01no382_f15.g1 PHD_FILE: MSMg01no382_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCACTATATCCAGAGGATCCGCGGAATTCTACTGGGTAT
TACTTACAGGCATATAGGTGAGGGCTTACTTACAGAAGCAGATATGACTC
AGAGCCCACCCCAGAATAGGTGACAGAGCACAAGAGTTGAAAACCTGGTG
CACACTGTGCAACCTGCAGACTGCTCAACTGGTTGGAGAATGTCAGTCTG
AGCCTCTTCCAGGTGACCGGCCTAGCCTCAGAGTCTTCTTTGCAGCCTGA
CTTGTCTAAATCTTCTTTTCAGCTCAACTTCTCCTTAGTCTGAGAGTGAC
TCTTAGGCTCCCTTCTTTCTTAATCTGGCAGGATGGGGTCTAGTCAATCT
GGTCTGTTTCAGGGACTTCCTGAAGCCAAATTGAGTTGTTTAGTGTAGAG
GAATTTTAATCCAGCAACATGGCTGCTCTGATCACATCCAAAAACCTTGT
AGGTCTGTGTAATCTAATTAGAATGCAGACATACCTTAGTATACACCTTT
AATCCCAAACAATAAAGGTAAAGTTAGTTTGTAGAAGGAAGCATCCATGT
TTGAAAGTGATGTCTAATTAACTGGCAGACAAAGTGATGCATCAGAGAAA
GATCTGACCGAATAGGATATGCCCAGCTCTAACGAGAACACCGAGAATAG
AGAAGCTACTTATGAGAACATTGTGGAGTGAGATAGGAGAGACATGTTTA
CTGGGATAGTTTTACAGAGACATACTGAATTGAGAACAGCTTTACACTGG
AAATAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACCATTAAATGTCTGTTTGAAGGAAAAACAACTTTAACCTAAGG
AGCTACAAAGTGAAGGAATTTAGAGTTTCTCTGCCCCTCAGAAGGGCCTG
TGCTTGAAAGGAAATGTAAAAGCCTTGCTCAGAAGCCTCCATTATAGGAG
TTATTGAGTTGTCTGTGGCAATTCTAGAGTGGAAAGACCTAGAATGTATA
TGTAAAGATTTATGTGTATATAAATGAGTACAGGCTGGGAAATAGTCTTC
TGCCTTCAAAGGCTCCACAGACAGCATAGAACCCAATGACTAAAGTCAAT
GACCAATGACTAAAGATGTTGGATTACTAATATTCCACCATCTTTAAGAT
TAAGACTAGAGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT
GTTCTTCCGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCA
CAACCATCCATAATGAGATCTGACTCCCTCTTCTGGAGTGTCTGAGGACA
GCCGCAATGTACCTACNTATAATAAATAAATAAAAACAAAGGAAAAAAAA
AGATTTGTAAAAAGATTAAGACTAGAGGGTCCTCTAGGTGGCTATCCGTG
TAGTCACCCTACGAAACTGATTTCTGATGGGGAGGCTGCTTAAGGAAAGG
GTAAAACCTGGGGCATAAAAAGTTGCCAAAAGGGGTAAAACCTGGGGGGT
AAAAAATTGCCAATGGTCAGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_f15.g1 MSMg01no382_f15.g1 CHROMAT_FILE:
MSMg01no382_f15.g1 PHD_FILE: MSMg01no382_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:04 2005
         (533 letters)



>mm_chr4_116377301_116378234
          Length = 934

 Score =  988 bits (511), Expect = 0.0
 Identities = 528/534 (98%), Gaps = 1/534 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   accattaaatgtctgtttgaaggaaaaacaactttaacctaaggagctacaaagtgaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accattaaatgtctgtttgaaggaaaaacaactttaacctaaggagctacaaagtgaagg 260

                                                                       
Query: 61  aatttagagtttctctgcccc-tcagaagggcctgtgcttgaaaggaaatgtaaaagcct 119
           | ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 261 attttagagtttctctgccccctcagaagggcctgtgcttgaaaggaaatataaaagcct 320

                                                                       
Query: 120 tgctcagaagcctccattataggagttattgagttgtctgtggcaattctagagtggaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctcagaagcctccattataggagttattgagttgtctgtggcaattctagagtggaaa 380

                                                                       
Query: 180 gacctagaatgtatatgtaaagatttatgtgtatataaatgagtacaggctgggaaatag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacctagaatgtatatgtaaagatttatgtgtatataaatgagtacaggctgggaaatag 440

                                                                       
Query: 240 tcttctgccttcaaaggctccacagacagcatagaacccaatgactaaagtcaatgacca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttctgccttcaaaggctccacagacagcatagaacccaatgactaaagtcaatgacca 500

                                                                       
Query: 300 atgactaaagatgttggattactaatattccaccatctttaagattaagactagaggggc 359
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 atgactaaagatgttggattactaatattccaacatctttaagattaagactagaggggc 560

                                                                       
Query: 360 tggtgagatggctcagtgggtaagagcacccgactgttcttccgaaggtcaggagttcaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggtgagatggctcagtgggtaagagcacccgactgttcttccgaaggtcaggagttcaa 620

                                                                       
Query: 420 atcccagcaaccacatggtggctcacaaccatccataatgagatctgactccctcttctg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcccagcaaccacatggtggctcacaaccatccataatgagatctgactccctcttctg 680

                                                                 
Query: 480 gagtgtctgaggacagccgcaatgtacctacntataataaataaataaaaacaa 533
           ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 681 gagtgtctgaggacagccgcagtgtacctacatataataaataaataaaaacaa 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 934
Length adjustment: 10
Effective length of query: 523
Effective length of database: 924
Effective search space:   483252
Effective search space used:   483252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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